Query gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 179
No_of_seqs 123 out of 910
Neff 4.9
Searched_HMMs 33803
Date Tue May 24 16:49:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780269.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2cxa_A Leucyl/phenylalanyl-tR 100.0 0 0 456.0 21.0 160 16-177 1-160 (178)
2 >1ne9_A FEMX; protein, ligase; 97.6 0.0032 9.6E-08 40.8 12.5 147 14-160 6-178 (180)
3 >1lrz_A FEMA, factor essential 85.0 3.3 9.7E-05 22.4 6.7 94 66-159 170-282 (284)
4 >1qwv_A PBP, pheromone-binding 52.1 12 0.00034 19.1 2.7 65 31-95 20-86 (90)
5 >1u3m_A CHPRP, prion-like prot 47.4 5.9 0.00017 20.8 0.6 20 94-113 1-20 (117)
6 >2j0p_A HEMS, hemin transport 39.2 28 0.00084 16.7 3.0 92 45-140 28-164 (345)
7 >1tpx_A Prion protein, major p 36.1 10 0.0003 19.4 0.3 22 93-114 8-29 (121)
8 >1zn6_A Phage-related conserve 35.0 6.1 0.00018 20.7 -0.9 30 14-45 101-130 (227)
9 >2hq2_A Putative heme/hemoglob 33.2 27 0.0008 16.8 2.1 93 45-141 38-175 (354)
10 >2ecf_A Dipeptidyl peptidase I 31.5 23 0.00067 17.3 1.5 16 8-23 20-35 (91)
11 >3heq_A Major prion protein; c 30.8 16 0.00047 18.2 0.6 23 92-114 28-50 (142)
12 >1orv_A Dipeptidyl peptidase I 29.4 31 0.00093 16.4 1.9 16 8-23 22-37 (103)
13 >1wfx_A Probable RNA 2'-phosph 29.3 22 0.00065 17.4 1.1 55 25-83 2-62 (83)
14 >2dxq_A AGR_C_4057P, acetyltra 28.1 47 0.0014 15.3 10.9 113 46-159 13-142 (150)
15 >3fyn_A Integron gene cassette 26.0 52 0.0015 15.1 10.0 120 41-160 26-162 (176)
16 >1edt_A Endo-beta-N-acetylgluc 25.5 47 0.0014 15.4 2.2 55 119-173 104-159 (271)
17 >1u5l_A Prion protein; pRNP, P 25.2 19 0.00056 17.7 0.2 21 94-114 1-21 (108)
18 >1xfd_A Dipeptidyl aminopeptid 25.0 54 0.0016 15.0 2.7 18 6-23 20-37 (96)
19 >1blx_A Cyclin-dependent kinas 23.7 33 0.00098 16.2 1.2 59 46-104 1-66 (121)
20 >1jey_B KU80; double-strand DN 23.7 57 0.0017 14.8 4.5 35 108-142 119-157 (200)
21 >3hcn_A Ferrochelatase, mitoch 23.0 42 0.0012 15.6 1.6 57 28-86 37-101 (143)
22 >3iwg_A Acetyltransferase, GNA 20.6 66 0.0019 14.4 7.6 76 84-159 179-266 (276)
No 1
>>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} (A:79-256)
Probab=100.00 E-value=0 Score=455.97 Aligned_cols=160 Identities=35% Similarity=0.572 Sum_probs=155.3
Q ss_pred CCCEEEEHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 96187424446117457765215881687669889999998502668899872699999999998649826999965372
Q gi|254780269|r 16 LRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDV 95 (179)
Q Consensus 16 ~~R~il~~~~~hisrsLrk~lrk~~~~itin~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~ 95 (179)
|||+||+|+++||||||+|.+|++.|+|++|++|++||++||.++ +++|||+++|+++|.+||++|+|||||||++|+
T Consensus 1 dPR~vl~~~~~hisrsl~k~~r~~~~~i~in~~F~~Vi~~Ca~~~--~~~TWI~~~~~~aY~~Lh~~G~aHSVEvw~~~e 78 (178)
T 2cxa_A 1 DPRAVLWPESLHISRSXKRFHKRSPYRVTXNYAFGQVIEGCASDR--EEGTWITRGVVEAYHRLHELGHAHSIEVWREDE 78 (178)
T ss_dssp SSEEEECGGGCCCCHHHHHHHHTCCCEEEESSCHHHHHHHHHTC-----CTTCCHHHHHHHHHHHHTTSEEEEEEEETTE
T ss_pred CCCEEECCCCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHCCCCC--CCCEECHHHHHHHHHHHHHCCEEEEEEEEECCC
T ss_conf 789898876524577898886348866877804899997107899--888110589999999998688689998996582
Q ss_pred EEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCEEECHHHHHHHHHHHHHCCC
Q ss_conf 01211023205721200344525768999999999999968973999075893477119798369999999999983899
Q gi|254780269|r 96 LVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPE 175 (179)
Q Consensus 96 LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t~HL~slGa~~i~r~~fl~~L~~al~~p~ 175 (179)
||||+|||+||++||||||||+++||||+||++|+++|+.+||.|||||++||||+||||++|||++|+++|++++++|.
T Consensus 79 LvGGlyGv~iG~~f~gESMFs~~~~aSK~al~~L~~~l~~~g~~liD~Q~~~~hl~slGa~~i~R~~Fl~~l~~a~~~~~ 158 (178)
T 2cxa_A 79 LVGGXYGVAQGTLFCGESXFSRXENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQXRLGRL 158 (178)
T ss_dssp EEEEEEEEEETTEEEEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEESCCHHHHHTTCEEECHHHHHHHHHHHTTCCC
T ss_pred EEEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCEECCHHHHHHHHHHHHHCCC
T ss_conf 57777899638848853201058977899999999999978990999566988898529988289999999999971899
Q ss_pred CC
Q ss_conf 88
Q gi|254780269|r 176 IS 177 (179)
Q Consensus 176 ~~ 177 (179)
..
T Consensus 159 ~~ 160 (178)
T 2cxa_A 159 PN 160 (178)
T ss_dssp CT
T ss_pred CC
T ss_conf 85
No 2
>>1ne9_A FEMX; protein, ligase; 1.70A {Weissella viridescens} (A:138-317)
Probab=97.57 E-value=0.0032 Score=40.76 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=104.3
Q ss_pred CCCCCEEEEHHHC--------CCCHHHHHHHHC---CCCEEEECCCHHH---HHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3996187424446--------117457765215---8816876698899---9999850266889987269999999999
Q gi|254780269|r 14 KPLRRGIIPLETF--------HTPKRLKKYIRR---ELYDIRINTAFES---VISACAQKTQKRPTTWINMTIQKAYIDL 79 (179)
Q Consensus 14 sP~~R~il~~~~~--------hisrsLrk~lrk---~~~~itin~~F~~---VI~~Ca~~r~~~~~TWI~~~i~~aY~~L 79 (179)
.|..-.++++..+ ..|++.||.+|+ ..++++.-...+. ..+.-..........-...+........
T Consensus 6 ~~~~~~~~~L~~~~~~e~~~~~~~~~~Rr~irr~~r~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (180)
T 1ne9_A 6 QPRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAA 85 (180)
T ss_dssp SCSEEEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 53258999767898889999864897999999999769779853987999999999999999659987798999999874
Q ss_pred HHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEC---CCHHHHHHHHHHHHHHHCCCEEEEECCCCH--------
Q ss_conf 864982699996537201211023205721200344525---768999999999999968973999075893--------
Q gi|254780269|r 80 FYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHM---ENASKICLTHLVKHLKKRQFLLLDIQFITN-------- 148 (179)
Q Consensus 80 h~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~---~nASKiAl~~L~~~l~~~g~~liD~Q~~t~-------- 148 (179)
...+.+.-..+..+|++||+.+...-|+.+..--+-+.. ..+.-+-++.+++.+..+|+..+|....++
T Consensus 86 ~~~~~~~l~~~~~~~~~va~~l~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~i~~a~~~G~~~~dfg~~~~~~~~~gl~ 165 (180)
T 1ne9_A 86 FDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLY 165 (180)
T ss_dssp SCTTTEEEEEEEETTEEEEEEEEEEETTEEEEEEEEECSSCCTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCHHH
T ss_pred CCCCCEEEEEEEECCEEEEEEEEEEECCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHH
T ss_conf 55774599999919907999999998999999972144024426069999999999998799799827987888995389
Q ss_pred -HHHHCCCEEECH
Q ss_conf -477119798369
Q gi|254780269|r 149 -HLRQFGAIEITH 160 (179)
Q Consensus 149 -HL~slGa~~i~r 160 (179)
.++.+|+..+|+
T Consensus 166 ~fK~~fg~~~~p~ 178 (180)
T 1ne9_A 166 VFKHVFVKDAPRE 178 (180)
T ss_dssp HHHHHHCCSCCEE
T ss_pred HHHHCCCCCCCHH
T ss_conf 9865759985111
No 3
>>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} (A:111-394)
Probab=84.99 E-value=3.3 Score=22.39 Aligned_cols=94 Identities=5% Similarity=-0.175 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHC--CCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEE----CCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 87269999999999864--98269999653720121102320572120034452----5768999999999999968973
Q gi|254780269|r 66 TWINMTIQKAYIDLFYM--GYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSH----MENASKICLTHLVKHLKKRQFL 139 (179)
Q Consensus 66 TWI~~~i~~aY~~Lh~~--G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~----~~nASKiAl~~L~~~l~~~g~~ 139 (179)
+...+...+-+..|++. |.+.=+.++.+|++|||.+.+.-|+..+.--+=+. ...++.+.++.+.++++.+|+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~va~~~~l~~~~~~~~~~~g~~~~~~~~~~~~lL~~~~i~~a~~~G~~ 249 (284)
T 1lrz_A 170 HNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYALNHGID 249 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECSSCEEEEEEEECGGGGGGCHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCC
T ss_conf 02046688888888765567788998507995599999999899999993543675563490199999999999987998
Q ss_pred EEEE-CCCCH------------HHHHCCCEEEC
Q ss_conf 9990-75893------------47711979836
Q gi|254780269|r 140 LLDI-QFITN------------HLRQFGAIEIT 159 (179)
Q Consensus 140 liD~-Q~~t~------------HL~slGa~~i~ 159 (179)
.+|. .-.++ .++.+|+..+|
T Consensus 250 ~~Dfgg~~~~~k~~~~~~gl~~FK~~fg~~~~~ 282 (284)
T 1lrz_A 250 RYNFYGVSGKFTEDAEDAGVVKFKKGYNAEIIE 282 (284)
T ss_dssp EEEEEECCSCCSTTCTTHHHHHHHHTTTCEEEE
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEE
T ss_conf 998079868888787665089998506992488
No 4
>>1qwv_A PBP, pheromone-binding protein; APOLPBP, hexahelical fold, PBP fold, transport protein; NMR {Antheraea polyphemus} (A:53-142)
Probab=52.09 E-value=12 Score=19.05 Aligned_cols=65 Identities=8% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHH-HHHHCCCEEEEEEEECCC
Q ss_conf 5776521588168766988999999850266-8899872699999999-998649826999965372
Q gi|254780269|r 31 RLKKYIRRELYDIRINTAFESVISACAQKTQ-KRPTTWINMTIQKAYI-DLFYMGYAHTIEAWKKDV 95 (179)
Q Consensus 31 sLrk~lrk~~~~itin~~F~~VI~~Ca~~r~-~~~~TWI~~~i~~aY~-~Lh~~G~aHSvE~w~~~~ 95 (179)
+...++|+.+--=.+-+..-+.|+.|..... ..+..|-.-++-..|. +.|++|||-|+|+--++-
T Consensus 20 na~efak~hgade~lAkqlV~lIH~CEk~~~~~~D~C~r~l~VA~CFk~~ih~l~wAPsme~i~~E~ 86 (90)
T 1qwv_A 20 NAKDFAMKHGADETMAQQLVDIIHGCEKSAPPNDDKCMKTIDVAMCFKKEIHKLNWVPNMDLVIGEV 86 (90)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999888418868999999999999986479999838999999999999989728997099999999
No 5
>>1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR {Gallus gallus} (A:)
Probab=47.43 E-value=5.9 Score=20.83 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=16.1
Q ss_pred CCEEEEEEEEEECCCEEEEE
Q ss_conf 72012110232057212003
Q gi|254780269|r 94 DVLVGGLYGVSLGAVFFGES 113 (179)
Q Consensus 94 ~~LvGGlyGv~iG~~F~GES 113 (179)
|.+|||+-|..||++|-+-.
T Consensus 1 Gav~gma~GY~LGra~~Rp~ 20 (117)
T 1u3m_A 1 GSVVGGLGGYAMGRVMSGMN 20 (117)
T ss_dssp CCSSSCSSCCEECCCCCCCS
T ss_pred CCCCCCCCHHHHHHHHCCCC
T ss_conf 96223530343200113674
No 6
>>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} (A:)
Probab=39.24 E-value=28 Score=16.67 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=44.7
Q ss_pred ECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE----------EEEECCCEEEEEEEEEE-CC------
Q ss_conf 66988999999850266889987269999999999864982699----------99653720121102320-57------
Q gi|254780269|r 45 INTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTI----------EAWKKDVLVGGLYGVSL-GA------ 107 (179)
Q Consensus 45 in~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSv----------E~w~~~~LvGGlyGv~i-G~------ 107 (179)
++---.+++.++- +..-+-++++..+...+|-..|..-++ -.-..+--.+|-||..+ |+
T Consensus 28 lgvSEaellaa~~----g~~~~rl~~~~~~lL~~l~~lG~VmaitrN~~aVhE~~G~y~~~~~~g~~~l~l~~~~idlrL 103 (345)
T 2j0p_A 28 MGISEAELTHSRV----SHDAKRLKGDARALLAALEAVGEVKAITRNTYAVHEQMGRYENQHLNGHAGLILNPRNLDLRL 103 (345)
T ss_dssp TTSCHHHHHHHHB----TTTEEEBCSCHHHHHHHGGGGCCEEEEEECSSEEEEEEECCCSEECSSSEEEECCTTSSCEEE
T ss_pred HCCCHHHHHHHCC----CCCEEECCCCHHHHHHHHHHCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEE
T ss_conf 0999999997357----673799777899999876650856899717977998876437853178246777687421798
Q ss_pred -------C----------------EE---EEEEE--EECCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf -------2----------------12---00344--5257689999999999999689739
Q gi|254780269|r 108 -------V----------------FF---GESMF--SHMENASKICLTHLVKHLKKRQFLL 140 (179)
Q Consensus 108 -------~----------------F~---GESMF--s~~~nASKiAl~~L~~~l~~~g~~l 140 (179)
+ || |+.|| +...+...-|+-.|++.+....-..
T Consensus 104 f~~~w~~~faV~~~~~~g~~~SiQFFD~~G~AvhKIyl~~~s~~~a~~~lv~~f~~~~q~~ 164 (345)
T 2j0p_A 104 FLNQWASAFTLTEETRHGVRHSIQFFDHQGDALHKVYVTEQTDMPAWEALLAQFITTENPE 164 (345)
T ss_dssp EGGGEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCSCCCC
T ss_pred EHHHCCEEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 7322629999985068984589998878682113564178998899999999861757886
No 7
>>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} (A:)
Probab=36.10 E-value=10 Score=19.41 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.0
Q ss_pred CCCEEEEEEEEEECCCEEEEEE
Q ss_conf 3720121102320572120034
Q gi|254780269|r 93 KDVLVGGLYGVSLGAVFFGESM 114 (179)
Q Consensus 93 ~~~LvGGlyGv~iG~~F~GESM 114 (179)
.|.+|||+-|..||++|-+-.|
T Consensus 8 ~Gav~Gma~GY~LGram~Rp~~ 29 (121)
T 1tpx_A 8 AGAVVGGLGGYMLGSAMSRPLI 29 (121)
T ss_dssp ------CCTTCEECCCCCCCCC
T ss_pred CHHHHHHHHHHHHCCCCCCCCC
T ss_conf 1025540144543146788876
No 8
>>1zn6_A Phage-related conserved hypothetical protein; novel, structural genomics, PSI, protein structure initiative; 1.80A {Bordetella bronchiseptica RB50} (A:)
Probab=34.98 E-value=6.1 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=12.7
Q ss_pred CCCCCEEEEHHHCCCCHHHHHHHHCCCCEEEE
Q ss_conf 39961874244461174577652158816876
Q gi|254780269|r 14 KPLRRGIIPLETFHTPKRLKKYIRRELYDIRI 45 (179)
Q Consensus 14 sP~~R~il~~~~~hisrsLrk~lrk~~~~iti 45 (179)
....|||||.+.|.=.+.-.. +|.+|.|+.
T Consensus 101 ~~~~RClIP~~gFyEw~~~~g--~K~p~~i~~ 130 (227)
T 1zn6_A 101 AKAQHCIIPADAIYEPDWRSG--KAVPTRFTR 130 (227)
T ss_dssp HTTCEEEEEEEEEEEEECTTS--SCEEEEEEE
T ss_pred HCCCEEEEEEEEEEECCCCCC--CCEEEEEEC
T ss_conf 166489997227887544677--643476550
No 9
>>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat, structural genomics; HET: HEM; 1.45A {Escherichia coli O157} (A:)
Probab=33.18 E-value=27 Score=16.81 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=58.2
Q ss_pred ECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE----------EEEEECCCEEEEEEEEEE-CC------
Q ss_conf 6698899999985026688998726999999999986498269----------999653720121102320-57------
Q gi|254780269|r 45 INTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHT----------IEAWKKDVLVGGLYGVSL-GA------ 107 (179)
Q Consensus 45 in~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHS----------vE~w~~~~LvGGlyGv~i-G~------ 107 (179)
++--..+++.++- +..-+-++.+..+...+|-..|..-+ +-.-..+--.+|-||..+ ++
T Consensus 38 lgvSEaellaa~~----g~~v~~l~~~~~~lL~~l~~lG~VmaitrN~~aVhE~~G~y~~~~~~g~~~l~l~~~~idlrL 113 (354)
T 2hq2_A 38 MNIREAELAFARV----THDAWRMHGDIREILAALESVGETKCICRNEYAVHEQVGTFTNQHLNGHAGLILNPRALDLRL 113 (354)
T ss_dssp TTSCHHHHHHHHB----TTTEEEECSCHHHHHHHHGGGCCEEEEEECSSEEEEEEECCCSEECSSSSEEECCTTSCCEEE
T ss_pred CCCCHHHHHHHCC----CCCEEECCCCHHHHHHHHHHHCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEECCCCCCEEE
T ss_conf 0998999997167----884798787999999877751856799727867999887526865278136887686432487
Q ss_pred -------C----------------EE---EEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf -------2----------------12---0034452--576899999999999996897399
Q gi|254780269|r 108 -------V----------------FF---GESMFSH--MENASKICLTHLVKHLKKRQFLLL 141 (179)
Q Consensus 108 -------~----------------F~---GESMFs~--~~nASKiAl~~L~~~l~~~g~~li 141 (179)
+ || |+.||.. ..+...-|+-.|++.++...-...
T Consensus 114 f~~~w~~ifaV~~~~~~g~~~SlQFFD~~G~avhKIyl~~~sd~~a~~~lv~~f~~~~q~~~ 175 (354)
T 2hq2_A 114 FLNQWASVFHIKENTARGERQSIQFFDHQGDALLKVYATDNTDMAAWSELLARFITDENTPL 175 (354)
T ss_dssp CGGGEEEEEEEEECCTTSCEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCSCCCCC
T ss_pred ECCCCEEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 62004099999851689850778988676811036752799988999999998627678877
No 10
>>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} (A:192-282)
Probab=31.50 E-value=23 Score=17.25 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=12.7
Q ss_pred CEEEEECCCCCEEEEH
Q ss_conf 7078873996187424
Q gi|254780269|r 8 QDISWIKPLRRGIIPL 23 (179)
Q Consensus 8 ~~i~WwsP~~R~il~~ 23 (179)
..-+||||+-+.|...
T Consensus 20 ~~a~wWSPD~~~iaf~ 35 (91)
T 2ecf_A 20 HTGYWWAPDDSAIAYA 35 (91)
T ss_dssp CCSEEECTTSSCEEEE
T ss_pred CCCEEECCCCCEEEEE
T ss_conf 4535788998814046
No 11
>>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2k1d_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2kfo_A 2k5o_A 2kfm_A 2kfl_A (A:)
Probab=30.83 E-value=16 Score=18.22 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=18.6
Q ss_pred ECCCEEEEEEEEEECCCEEEEEE
Q ss_conf 53720121102320572120034
Q gi|254780269|r 92 KKDVLVGGLYGVSLGAVFFGESM 114 (179)
Q Consensus 92 ~~~~LvGGlyGv~iG~~F~GESM 114 (179)
-.|.+|||+-|..||++|-.-.|
T Consensus 28 aaGAVvG~~~GY~LGra~~Rp~~ 50 (142)
T 3heq_A 28 AAGAVVGGLGGYMLGSAMSRPII 50 (142)
T ss_dssp ---------CCCEECCCCCCCCC
T ss_pred HHHHHHHCCHHHHHCCCCCCCCC
T ss_conf 65456531112433146788876
No 12
>>1orv_A Dipeptidyl peptidase IV; serine protease, mechanism, oxyanion HOLE, substrate channeling, drug design, diabetes mellitus, hydrolase; HET: NAG BMA; 1.80A {Sus scrofa} (A:152-254)
Probab=29.43 E-value=31 Score=16.40 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=12.9
Q ss_pred CEEEEECCCCCEEEEH
Q ss_conf 7078873996187424
Q gi|254780269|r 8 QDISWIKPLRRGIIPL 23 (179)
Q Consensus 8 ~~i~WwsP~~R~il~~ 23 (179)
..-+|||||-+.|...
T Consensus 22 ~~a~wWSPD~~~la~~ 37 (103)
T 1orv_A 22 YSALWWSPNGTFLAYA 37 (103)
T ss_dssp SBCEEECTTSSEEEEE
T ss_pred CCCEEECCCCCEEEEE
T ss_conf 6625989998826378
No 13
>>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} (A:1-83)
Probab=29.31 E-value=22 Score=17.36 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=40.2
Q ss_pred HCCCCHHHHHHHHCCCC--EEEECCC----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 46117457765215881--6876698----89999998502668899872699999999998649
Q gi|254780269|r 25 TFHTPKRLKKYIRRELY--DIRINTA----FESVISACAQKTQKRPTTWINMTIQKAYIDLFYMG 83 (179)
Q Consensus 25 ~~hisrsLrk~lrk~~~--~itin~~----F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G 83 (179)
..++||.|-..+|..+- -+.+|.+ +++.++++.. ..-.|++.+.+..-.+-...+
T Consensus 2 rv~lSK~Ls~iLRH~p~~~gL~ld~~G~v~v~~Ll~~~~~----~~~~~~t~~~i~~vV~~d~K~ 62 (83)
T 1wfx_A 2 RVRLSKTLAGILRHHPGRYGVRLTREGWARVSEVVEGLRK----AGWSWVEEWHIVGVALHDPKG 62 (83)
T ss_dssp -CCHHHHHHHHHHTCTGGGTCCCCTTCCEEHHHHHHHHHH----TTCTTCCHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHCCCHHHCCCCCCCCCCEEHHHHHHHHHH----CCCCCCCHHHHHHHHHCCCCC
T ss_conf 0059999999977897577997188986989999986987----289868699999998538864
No 14
>>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Agrobacterium tumefaciens str} (A:)
Probab=28.09 E-value=47 Score=15.31 Aligned_cols=113 Identities=4% Similarity=-0.072 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEE-E-----EEEE----
Q ss_conf 69889999998502668899872699999999998649826999965372012110232057212-0-----0344----
Q gi|254780269|r 46 NTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFF-G-----ESMF---- 115 (179)
Q Consensus 46 n~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~-G-----ESMF---- 115 (179)
..+++.+.+-...... ....+..+...+.+.+....+...++=++.+|++||..-+........ + .-.|
T Consensus 13 ~~D~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~~~~~~~~~~~~~i~~~~v~~ 91 (150)
T 2dxq_A 13 PGDLPGLLELYQVLNP-SDPELTTQEAGAVFAAXLAQPGLTIFVATENGKPVATATLLIVPNLTRAARPYAFIENVVTLE 91 (150)
T ss_dssp GGGHHHHHHHHHHHCT-TSCCCCHHHHHHHHHHHHHSTTEEEEEEEETTEEEEEEEEEEECCSHHHHCCEEEEEEEECCG
T ss_pred HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEE
T ss_conf 8999999999999733-477778699999999998499948999999998889989862256666888679998898751
Q ss_pred -EECCCHHHHHHHHHHHHHHHCCCEEEEECCC--CH----HHHHCCCEEEC
Q ss_conf -5257689999999999999689739990758--93----47711979836
Q gi|254780269|r 116 -SHMENASKICLTHLVKHLKKRQFLLLDIQFI--TN----HLRQFGAIEIT 159 (179)
Q Consensus 116 -s~~~nASKiAl~~L~~~l~~~g~~liD~Q~~--t~----HL~slGa~~i~ 159 (179)
++....++..+-++.+.++..|+.-+-+... |+ -.+++|-+.+.
T Consensus 92 ~~r~~Gig~~ll~~~~~~~~~~~~~~i~l~~~~~N~~a~~~y~~~GF~~~~ 142 (150)
T 2dxq_A 92 ARRGRGYGRTVVRHAIETAFGANCYKVXLLTGRHDPAVHAFYESCGFVQNK 142 (150)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTTCSEEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEE
T ss_conf 135760778999999999998799899999838999999999986993924
No 15
>>3fyn_A Integron gene cassette protein HFX_CASS3; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.45A {Uncultured bacterium} (A:)
Probab=25.96 E-value=52 Score=15.08 Aligned_cols=120 Identities=9% Similarity=-0.096 Sum_probs=81.7
Q ss_pred CEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCEEEEEEEEEECC-CEEEEEE----
Q ss_conf 168766988999999850266889987269999999999864-9826999965372012110232057-2120034----
Q gi|254780269|r 41 YDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYM-GYAHTIEAWKKDVLVGGLYGVSLGA-VFFGESM---- 114 (179)
Q Consensus 41 ~~itin~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~-G~aHSvE~w~~~~LvGGlyGv~iG~-~F~GESM---- 114 (179)
++---..+++.+.+-+.........++..+...+.+..+... ...+++=+..+|++||-......-. ...+.+.
T Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~vG~~~~~~~~~~~~~~~~~~i~~ 105 (176)
T 3fyn_A 26 VRTAHIGDVPVLVRLXSEFYQEAGFALPHDAAIRAFKALLGKPDLGRIWLIAEGTESVGYIVLTLGFSXEYGGLRGFVDD 105 (176)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHCGGGEEEEEEEETTEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCEEEEEE
T ss_conf 82497899999999999999854887763046999999854998549999999999999999993355013775156312
Q ss_pred EE-----ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH------HHHHCCCEEECH
Q ss_conf 45-----25768999999999999968973999075893------477119798369
Q gi|254780269|r 115 FS-----HMENASKICLTHLVKHLKKRQFLLLDIQFITN------HLRQFGAIEITH 160 (179)
Q Consensus 115 Fs-----~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t~------HL~slGa~~i~r 160 (179)
|. +....++..+-++.++++..|+..+-+..... -..++|-+.+.+
T Consensus 106 ~~v~p~~rg~g~g~~ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 162 (176)
T 3fyn_A 106 FFVRPNARGKGLGAAALQTVKQGCCDLGVRALLVETGPEDHPARGVYSRAGFEESGR 162 (176)
T ss_dssp EEECGGGTTSSHHHHHHHHHHHHHHHTTCCCEECCCC--------HHHHTTCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEECE
T ss_conf 665301148974899999999999975997799999589999999999889989687
No 16
>>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase); 1.90A {Streptomyces plicatus} (A:)
Probab=25.53 E-value=47 Score=15.36 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=38.0
Q ss_pred CCHHHHHHH-HHHHHHHHCCCEEEEECCCCHHHHHCCCEEECHHHHHHHHHHHHHC
Q ss_conf 768999999-9999999689739990758934771197983699999999999838
Q gi|254780269|r 119 ENASKICLT-HLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKH 173 (179)
Q Consensus 119 ~nASKiAl~-~L~~~l~~~g~~liD~Q~~t~HL~slGa~~i~r~~fl~~L~~al~~ 173 (179)
+.++..+++ .+++.++..|++-+|.-+..|-...-....-.+..|..++++..+.
T Consensus 104 ~~~~r~~fv~s~~~~~~~~~~DGiDidwe~~~~~~~~~~~~~~~~~~~l~~~lr~~ 159 (271)
T 1edt_A 104 SQQAASAFAKQLSDAVAKYGLDGVDFDDEYAEYGNNGTAQPNDSSFVHLVTALRAN 159 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEECSSCCTTGGGCCCCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999998659984473100577767798850378999999999987
No 17
>>1u5l_A Prion protein; pRNP, PRP, TSE, membrane protein; NMR {Trachemys scripta} (A:)
Probab=25.19 E-value=19 Score=17.74 Aligned_cols=21 Identities=43% Similarity=0.689 Sum_probs=16.8
Q ss_pred CCEEEEEEEEEECCCEEEEEE
Q ss_conf 720121102320572120034
Q gi|254780269|r 94 DVLVGGLYGVSLGAVFFGESM 114 (179)
Q Consensus 94 ~~LvGGlyGv~iG~~F~GESM 114 (179)
|.+||||=|..+|++-.|-.|
T Consensus 1 g~vvgglggy~lg~amsg~~l 21 (108)
T 1u5l_A 1 GSVVGGLGGYALGSAMSGMRM 21 (108)
T ss_dssp CCSCSSCTTSEECCCCSSCCC
T ss_pred CCCCCCCHHHHHHHHHCCCCC
T ss_conf 972335205555323226755
No 18
>>1xfd_A Dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} (A:154-249)
Probab=24.96 E-value=54 Score=14.96 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.2
Q ss_pred CCCEEEEECCCCCEEEEH
Q ss_conf 887078873996187424
Q gi|254780269|r 6 NSQDISWIKPLRRGIIPL 23 (179)
Q Consensus 6 d~~~i~WwsP~~R~il~~ 23 (179)
+...-+||||+-+.|...
T Consensus 20 ~~~~a~wWSPDs~~la~~ 37 (96)
T 1xfd_A 20 KTHIAHWWSPDGTRLAYA 37 (96)
T ss_dssp SSSEEEEECTTSSEEEEE
T ss_pred CCCCCEEECCCCCCCCEE
T ss_conf 654535889998811303
No 19
>>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} (A:102-181,A:286-326)
Probab=23.70 E-value=33 Score=16.25 Aligned_cols=59 Identities=7% Similarity=0.046 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHCCCEE------EEEEEECCCEEEEEEEEE
Q ss_conf 69889999998502668-899872699999999998649826------999965372012110232
Q gi|254780269|r 46 NTAFESVISACAQKTQK-RPTTWINMTIQKAYIDLFYMGYAH------TIEAWKKDVLVGGLYGVS 104 (179)
Q Consensus 46 n~~F~~VI~~Ca~~r~~-~~~TWI~~~i~~aY~~Lh~~G~aH------SvE~w~~~~LvGGlyGv~ 104 (179)
|.+..++|+.+....-. ..--.|..+|..+-..||..|+.| -|=+=.++.+-=+=+|++
T Consensus 1 dgDL~~~i~~~~~~~l~e~~i~~i~~QIl~gL~YLHs~gIIHRDIKPeNILI~~dg~VKI~DFGLA 66 (121)
T 1blx_A 1 DQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 66 (121)
T ss_dssp SCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred CCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCCCCEEECCCCCC
T ss_conf 376154444214789998999999999999999997699864678832159848997642001211
No 20
>>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (B:237-436)
Probab=23.67 E-value=57 Score=14.81 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=28.2
Q ss_pred CEEEEEEEEECC----CHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 212003445257----68999999999999968973999
Q gi|254780269|r 108 VFFGESMFSHME----NASKICLTHLVKHLKKRQFLLLD 142 (179)
Q Consensus 108 ~F~GESMFs~~~----nASKiAl~~L~~~l~~~g~~liD 142 (179)
.|+|+|-|-..+ .+|+.||.+|++.|...+-..|=
T Consensus 119 ~~~~~~~~i~~~~~~~~~s~~af~aL~~am~~~~~vaI~ 157 (200)
T 1jey_B 119 FFMGNQVLKVFAARDDEAAAVALSSLIHALDDLDMVAIV 157 (200)
T ss_dssp GCEEEEEEEEEECTTCHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 805885299947988851799999999999976958999
No 21
>>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A* (A:165-307)
Probab=23.04 E-value=42 Score=15.63 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHCC--------CCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 17457765215881687669889999998502--------668899872699999999998649826
Q gi|254780269|r 28 TPKRLKKYIRRELYDIRINTAFESVISACAQK--------TQKRPTTWINMTIQKAYIDLFYMGYAH 86 (179)
Q Consensus 28 isrsLrk~lrk~~~~itin~~F~~VI~~Ca~~--------r~~~~~TWI~~~i~~aY~~Lh~~G~aH 86 (179)
+|.+..+ +..+|.-.+......|++..... .+..++.|+.|.+.+.-.+|.+.|.-+
T Consensus 37 lP~~~~~--~gdpY~~q~~~t~~~i~~~l~~~~~~~~~~QS~~g~~~Wl~P~~~~~l~~l~~~G~k~ 101 (143)
T 3hcn_A 37 LPMSVVN--RGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKN 101 (143)
T ss_dssp CBHHHHT--TTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCE
T ss_pred CCCCHHH--CCCCCHHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 5432033--1796088899999999987345402221011477986666873899999999749972
No 22
>>3iwg_A Acetyltransferase, GNAT family; structural genomics, APC, PSI-2, protein structure initiative; HET: MSE; 2.30A {Colwellia psychrerythraea 34H} (A:)
Probab=20.63 E-value=66 Score=14.43 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=52.7
Q ss_pred CEEEEEEEECCCEEEE--EEEEEECCCEEEEEEEEEC-----CCHHHHHHHHHHHHHHHCCCEE-EEECCCCH----HHH
Q ss_conf 8269999653720121--1023205721200344525-----7689999999999999689739-99075893----477
Q gi|254780269|r 84 YAHTIEAWKKDVLVGG--LYGVSLGAVFFGESMFSHM-----ENASKICLTHLVKHLKKRQFLL-LDIQFITN----HLR 151 (179)
Q Consensus 84 ~aHSvE~w~~~~LvGG--lyGv~iG~~F~GESMFs~~-----~nASKiAl~~L~~~l~~~g~~l-iD~Q~~t~----HL~ 151 (179)
....+=+.++|++||= ++...-+....++-.+... ..-.+..+.++.+.++.+|... ++|...|. -.+
T Consensus 179 ~~~~~v~~~~g~~vG~~~l~~~~~~~~~~~~~~~~v~p~~rgkG~g~~ll~~~~~~a~~~g~~~~l~v~~~N~~a~~~y~ 258 (276)
T 3iwg_A 179 RKELFGYWHKGKLLAAGECRLFDQYQTEYADLGXIVAQSNRGQGIAKKVLTFLTKHAATQGLTSICSTESNNVAAQKAIA 258 (276)
T ss_dssp TTCEEEEEETTEEEEEEEEEECSSSCTTEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTCEEEEEEETTCHHHHHHHH
T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 57089999579832899999866788988999999998881899999999999999998699799998998999999999
Q ss_pred HCCCEEEC
Q ss_conf 11979836
Q gi|254780269|r 152 QFGAIEIT 159 (179)
Q Consensus 152 slGa~~i~ 159 (179)
++|-+.+.
T Consensus 259 k~GF~~~~ 266 (276)
T 3iwg_A 259 HAGFTSAH 266 (276)
T ss_dssp HTTEEEEE
T ss_pred HCCCEEEE
T ss_conf 87998961
Done!