Query gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 179 No_of_seqs 123 out of 910 Neff 4.9 Searched_HMMs 23785 Date Tue May 24 10:25:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780269.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cxa_A Leucyl/phenylalanyl-tRN 100.0 0 0 513.7 22.2 171 1-175 66-236 (256) 2 3gkr_A FEMX; peptidoglycan, he 96.3 0.073 3.1E-06 31.6 12.3 141 15-158 145-314 (336) 3 2v26_A Myosin VI; calmodulin-b 50.4 9.7 0.00041 18.6 2.8 85 50-155 105-190 (784) 4 2j0p_A HEMS, hemin transport p 38.1 21 0.0009 16.5 3.0 87 45-136 28-160 (345) 5 1kkh_A Mevalonate kinase; mixe 36.9 24 0.001 16.2 4.9 44 101-147 274-317 (317) 6 1tpx_A Prion protein, major pr 34.1 8 0.00034 19.1 0.3 22 93-114 8-29 (121) 7 1euv_A ULP1 protease; SUMO hyd 32.7 21 0.00087 16.6 2.2 18 63-80 44-61 (221) 8 2dfs_A Myosin-5A; myosin-V, in 31.7 8.7 0.00037 18.9 0.2 63 50-132 121-183 (1080) 9 2fr1_A Erythromycin synthase, 29.1 32 0.0013 15.4 5.7 57 120-176 375-443 (486) 10 1u3m_A CHPRP, prion-like prote 28.9 12 0.00051 18.0 0.5 26 94-119 1-26 (117) 11 2hq2_A Putative heme/hemoglobi 28.5 25 0.0011 16.0 2.1 84 48-136 41-170 (354) 12 3heq_A Major prion protein; ce 26.1 15 0.00064 17.4 0.6 22 93-114 29-50 (142) 13 1lrz_A FEMA, factor essential 25.3 37 0.0016 15.0 13.5 145 15-160 155-393 (426) 14 1wb0_A Chitinase 1, chitotrios 23.3 41 0.0017 14.8 2.7 90 65-169 48-140 (445) 15 1xu0_A Prion protein, XLPRP; a 21.5 19 0.0008 16.8 0.4 23 92-114 21-43 (130) No 1 >2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A* Probab=100.00 E-value=0 Score=513.68 Aligned_cols=171 Identities=36% Similarity=0.607 Sum_probs=164.5 Q ss_pred CCCCCCCCEEEEECCCCCEEEEHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 98887887078873996187424446117457765215881687669889999998502668899872699999999998 Q gi|254780269|r 1 MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLF 80 (179) Q Consensus 1 Mad~~d~~~i~WwsP~~R~il~~~~~hisrsLrk~lrk~~~~itin~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh 80 (179) |++ +++||+||||+||+||+|++|||||||||.+|++.|+||+|++|++||++||.++ +++||||++|+++|++|| T Consensus 66 w~~--~~~pi~WwsP~pR~Vl~p~~~hisrSLrk~lr~~~f~it~d~~F~~VI~~Ca~~r--~~~TWI~~eii~aY~~LH 141 (256) T 2cxa_A 66 WFS--PGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDR--EEGTWITRGVVEAYHRLH 141 (256) T ss_dssp CCC--TTSCCEEECCSSEEEECGGGCCCCHHHHHHHHTCCCEEEESSCHHHHHHHHHTC-----CTTCCHHHHHHHHHHH T ss_pred CCC--CCCCEEEECCCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHH T ss_conf 788--9996379827986686777643677788775569759987864799998427889--898478879999999999 Q ss_pred HCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCEEECH Q ss_conf 64982699996537201211023205721200344525768999999999999968973999075893477119798369 Q gi|254780269|r 81 YMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITH 160 (179) Q Consensus 81 ~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t~HL~slGa~~i~r 160 (179) ++|+|||||||++++||||+|||+||++||||||||+++|||||||++|+++|+.+||.|||||++||||+||||++||| T Consensus 142 ~~G~AHSVEvW~~~~LVGGlYGv~iG~~F~GESMFs~~~nASKvAL~~L~~~L~~~g~~liDcQ~~t~HL~slGA~~I~R 221 (256) T 2cxa_A 142 ELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPR 221 (256) T ss_dssp HTTSEEEEEEEETTEEEEEEEEEEETTEEEEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEESCCHHHHHTTCEEECH T ss_pred HCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCEEECH T ss_conf 67936999999899888635799768858723410306762599999999999977992999676987798529999589 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999983899 Q gi|254780269|r 161 VQYAKLLENALKHPE 175 (179) Q Consensus 161 ~~fl~~L~~al~~p~ 175 (179) ++|+++|++++.+|. T Consensus 222 ~eFl~~L~~~~~~~~ 236 (256) T 2cxa_A 222 RDYLNYLNQMRLGRL 236 (256) T ss_dssp HHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHCCCC T ss_conf 999999999970789 No 2 >3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1 UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A Probab=96.26 E-value=0.073 Score=31.56 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=86.2 Q ss_pred CCCCEEEEHHHC--------CCCHHHHHHHHC---CCCEEEECCCHHH------HHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 996187424446--------117457765215---8816876698899------99998502668899872699999999 Q gi|254780269|r 15 PLRRGIIPLETF--------HTPKRLKKYIRR---ELYDIRINTAFES------VISACAQKTQKRPTTWINMTIQKAYI 77 (179) Q Consensus 15 P~~R~il~~~~~--------hisrsLrk~lrk---~~~~itin~~F~~------VI~~Ca~~r~~~~~TWI~~~i~~aY~ 77 (179) |.-..+++++.. ..+++.|+.+|| +..+++.....++ +...-.. | ......+.+..+... T Consensus 145 ~r~t~~~~l~~~~~~~~~~~~~~~~~R~~irka~k~g~~~~~~~~~~dl~~~~~~~~~~~~-r--~g~~~~~~~~~~~l~ 221 (336) T 3gkr_A 145 PRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAE-R--HGITHRPIEYFQRMQ 221 (336) T ss_dssp CSEEEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHHHH-H--HTCCCCCHHHHHHHH T ss_pred CCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH-H--CCCCCCCHHHHHHHH T ss_conf 3159999888898889999865987899999998759789965872777899999999998-5--366679999999999 Q ss_pred HHHHCCCEEEEEEEECCCEEEEEEEEEECCCEE---EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC-----C-- Q ss_conf 998649826999965372012110232057212---003445257689999999999999689739990758-----9-- Q gi|254780269|r 78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFF---GESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFI-----T-- 147 (179) Q Consensus 78 ~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~---GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~-----t-- 147 (179) +....+..-=+-++.+|++|||.+.+.-|.... |=|--.....++-+.++...+.+..+|+..+|-.-. + T Consensus 222 ~~~~~~~~~~~~~~~~g~~va~~l~~~~~~~~~~~~~~s~~~~~~~~~~ll~~~~i~~a~~~G~~~~DfgG~~~~~~~~g 301 (336) T 3gkr_A 222 AAFDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDS 301 (336) T ss_dssp HHSCTTTEEEEEEEETTEEEEEEEEEEETTEEEEEEEEECSSCCTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCH T ss_pred HHCCCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH T ss_conf 74678856999997099699999999989999999702155545165599999999999987997998089878889952 Q ss_pred --HHHHHCCCEEE Q ss_conf --34771197983 Q gi|254780269|r 148 --NHLRQFGAIEI 158 (179) Q Consensus 148 --~HL~slGa~~i 158 (179) ..+.++|+..+ T Consensus 302 l~~FK~~fg~~~~ 314 (336) T 3gkr_A 302 LYVFKHVFVKDAP 314 (336) T ss_dssp HHHHHHHHCCSCC T ss_pred HHHHHHCCCCCCC T ss_conf 8998646599975 No 3 >2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 2vb6_A* 2vas_A* Probab=50.38 E-value=9.7 Score=18.58 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=51.9 Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHH Q ss_conf 99999985026688998726999999999986498269999653720121102320572120034452576899999999 Q gi|254780269|r 50 ESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHL 129 (179) Q Consensus 50 ~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L 129 (179) +++++.-.......-..=|+.--..||..|-..+.-.|| +..|||. +-+|.++|..|-+| T Consensus 105 ~~~~~~y~~~~~~~~pPHiyaiA~~Ay~~m~~~~~~QsI-------------------iisGESG-AGKTe~~K~il~yL 164 (784) T 2v26_A 105 SETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI-------------------IVSGESG-AGKTENTKFVLRYL 164 (784) T ss_dssp HHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEE-------------------EEECSTT-SSHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE-------------------EEEECCC-CCCCHHHHHHHHHH T ss_conf 799998728986889995999999999999860899569-------------------9995268-88349999999999 Q ss_pred HHHHHHCCCEEEEE-CCCCHHHHHCCC Q ss_conf 99999689739990-758934771197 Q gi|254780269|r 130 VKHLKKRQFLLLDI-QFITNHLRQFGA 155 (179) Q Consensus 130 ~~~l~~~g~~liD~-Q~~t~HL~slGa 155 (179) +..-.. +..+-|. .-.||-|++||- T Consensus 165 ~~~~~~-~~~i~~~il~snpiLEAFGN 190 (784) T 2v26_A 165 TESYGT-GQDIDDRIVEANPLLEAFGN 190 (784) T ss_dssp HHHHC-------CHHHHTHHHHHHHHE T ss_pred HHHCCC-CCCHHHHHHHHHHHHHHHCC T ss_conf 875379-98599989988899998358 No 4 >2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A* Probab=38.12 E-value=21 Score=16.50 Aligned_cols=87 Identities=13% Similarity=0.217 Sum_probs=54.3 Q ss_pred ECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-----------EEECCCEEEEEEEEEEC-C----- Q ss_conf 669889999998502668899872699999999998649826999-----------96537201211023205-7----- Q gi|254780269|r 45 INTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIE-----------AWKKDVLVGGLYGVSLG-A----- 107 (179) Q Consensus 45 in~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE-----------~w~~~~LvGGlyGv~iG-~----- 107 (179) ++-.-.+++.++- ++.-+.+.+++.+...+|...|...++- +|.+.. .+|-||..+| + T Consensus 28 lgvSEaeLlaa~~----g~~~~rl~~~~~~ll~~l~~lG~VmaltrN~~aVhE~~G~y~~~~-~~~~~~l~l~~~~idLR 102 (345) T 2j0p_A 28 MGISEAELTHSRV----SHDAKRLKGDARALLAALEAVGEVKAITRNTYAVHEQMGRYENQH-LNGHAGLILNPRNLDLR 102 (345) T ss_dssp TTSCHHHHHHHHB----TTTEEEBCSCHHHHHHHGGGGCCEEEEEECSSEEEEEEECCCSEE-CSSSEEEECCTTSSCEE T ss_pred CCCCHHHHHHHCC----CCCEEECCCCHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCCC-CCCCEEEEECCCCEEEE T ss_conf 1999999997077----775698678999999977751967999806877999987658856-37866577658750589 Q ss_pred C------------------------EE---EEEEE--EECCCHHHHHHHHHHHHHHHC Q ss_conf 2------------------------12---00344--525768999999999999968 Q gi|254780269|r 108 V------------------------FF---GESMF--SHMENASKICLTHLVKHLKKR 136 (179) Q Consensus 108 ~------------------------F~---GESMF--s~~~nASKiAl~~L~~~l~~~ 136 (179) + || |+.|| +..++....|.-.|++.+... T Consensus 103 lf~~~w~~~faV~e~~~~g~~~SlQFFD~~G~AvhKIylt~~S~~~A~~aLv~~~~~~ 160 (345) T 2j0p_A 103 LFLNQWASAFTLTEETRHGVRHSIQFFDHQGDALHKVYVTEQTDMPAWEALLAQFITT 160 (345) T ss_dssp EEGGGEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCS T ss_pred EEHHHEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCC T ss_conf 9800201999998317899717799998889756678826888789999999986275 No 5 >1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Probab=36.92 E-value=24 Score=16.21 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=30.8 Q ss_pred EEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 02320572120034452576899999999999996897399907589 Q gi|254780269|r 101 YGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFIT 147 (179) Q Consensus 101 yGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t 147 (179) +|..+=|.=+|-+||...++..+- .+...++..|+..++|++.| T Consensus 274 ~~ak~sGaG~Gg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 317 (317) T 1kkh_A 274 FGAKLTGAGGGGCVIILVNEEKEK---ELLKELNKEDVRIFNCRMMN 317 (317) T ss_dssp SEEEECSSSSSEEEEEECCGGGHH---HHHHHHHTSSCEEEEECBCC T ss_pred CEEEEECCCCCCEEEEEECHHHHH---HHHHHHHHCCCEEEEEEECC T ss_conf 589980788638899998815799---99999997498399999449 No 6 >1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1 Probab=34.07 E-value=8 Score=19.10 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.7 Q ss_pred CCCEEEEEEEEEECCCEEEEEE Q ss_conf 3720121102320572120034 Q gi|254780269|r 93 KDVLVGGLYGVSLGAVFFGESM 114 (179) Q Consensus 93 ~~~LvGGlyGv~iG~~F~GESM 114 (179) .|.+|||+-|..||++|-+-.| T Consensus 8 ~gav~g~~~gY~LG~amsrp~~ 29 (121) T 1tpx_A 8 AGAVVGGLGGYMLGSAMSRPLI 29 (121) T ss_dssp ------CCTTCEECCCCCCCCC T ss_pred CHHHHHHHHHHHHCCCCCCCCC T ss_conf 1025540145543146788876 No 7 >1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Probab=32.69 E-value=21 Score=16.58 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=14.5 Q ss_pred CCCCCCHHHHHHHHHHHH Q ss_conf 899872699999999998 Q gi|254780269|r 63 RPTTWINMTIQKAYIDLF 80 (179) Q Consensus 63 ~~~TWI~~~i~~aY~~Lh 80 (179) +++.|+|.++|++|..+- T Consensus 44 ~~~~WLnD~vI~~y~~~l 61 (221) T 1euv_A 44 APRRWLNDTIIEFFMKYI 61 (221) T ss_dssp STTCCCBHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHH T ss_conf 887535789999999999 No 8 >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus} Probab=31.71 E-value=8.7 Score=18.86 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=36.0 Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHH Q ss_conf 99999985026688998726999999999986498269999653720121102320572120034452576899999999 Q gi|254780269|r 50 ESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHL 129 (179) Q Consensus 50 ~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L 129 (179) +++++.......+.-..=|+.--..||..|...+--.|| ++.|||. +-+|.++|..|-+| T Consensus 121 ~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsI-------------------iisGeSG-aGKTe~~k~il~yl 180 (1080) T 2dfs_A 121 EDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI-------------------IVSGESG-AGKTVSAKYAMRYF 180 (1080) T ss_dssp HHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEE-------------------EEECSTT-SSHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE-------------------EEEECCC-CCHHHHHHHHHHHH T ss_conf 899998738987889995889999999999972899179-------------------9985799-98899999999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780269|r 130 VKH 132 (179) Q Consensus 130 ~~~ 132 (179) +.. T Consensus 181 ~~~ 183 (1080) T 2dfs_A 181 ATV 183 (1080) T ss_dssp HHT T ss_pred HHH T ss_conf 997 No 9 >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Probab=29.05 E-value=32 Score=15.41 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=45.7 Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECC------------CCHHHHHCCCEEECHHHHHHHHHHHHHCCCC Q ss_conf 68999999999999968973999075------------8934771197983699999999999838998 Q gi|254780269|r 120 NASKICLTHLVKHLKKRQFLLLDIQF------------ITNHLRQFGAIEITHVQYAKLLENALKHPEI 176 (179) Q Consensus 120 nASKiAl~~L~~~l~~~g~~liD~Q~------------~t~HL~slGa~~i~r~~fl~~L~~al~~p~~ 176 (179) -|+|.+|-.|++.++..|....-.+| ....+.+.|-..++.++-++.|..++..+.. T Consensus 375 aAAna~ld~la~~~r~~G~~~~sI~wg~w~~~Gm~~~~~~~~~~~~G~~~l~~~~~~~~l~~~l~~~~~ 443 (486) T 2fr1_A 375 APGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAEV 443 (486) T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 999999999999998779988998788116877667379999996699888999999999999728995 No 10 >1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR {Gallus gallus} SCOP: d.6.1.1 Probab=28.86 E-value=12 Score=18.00 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=20.0 Q ss_pred CCEEEEEEEEEECCCEEEEEEEEECC Q ss_conf 72012110232057212003445257 Q gi|254780269|r 94 DVLVGGLYGVSLGAVFFGESMFSHME 119 (179) Q Consensus 94 ~~LvGGlyGv~iG~~F~GESMFs~~~ 119 (179) |..||||=|..+|++-.+-+|---.+ T Consensus 1 gsvvgglggYmlGsaMsr~~~hF~n~ 26 (117) T 1u3m_A 1 GSVVGGLGGYAMGRVMSGMNYHFDRP 26 (117) T ss_dssp CCSSSCSSCCEECCCCCCCSCCCCSH T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCH T ss_conf 96223520455432322675557984 No 11 >2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat, structural genomics; HET: HEM; 1.45A {Escherichia coli O157} SCOP: e.62.1.1 PDB: 1u9t_A Probab=28.53 E-value=25 Score=16.03 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=46.3 Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE----------E-EEECCCEEEEEEEEEECC------C-- Q ss_conf 88999999850266889987269999999999864982699----------9-965372012110232057------2-- Q gi|254780269|r 48 AFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTI----------E-AWKKDVLVGGLYGVSLGA------V-- 108 (179) Q Consensus 48 ~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSv----------E-~w~~~~LvGGlyGv~iG~------~-- 108 (179) -=.+++.++. ++.-+=+..+..+...+|-..|...++ - +|.+.+ .+|-||..+|. + T Consensus 41 SEaeLvaA~~----g~~v~rL~~~~~~ll~~l~~lG~VmalTRN~~aVhE~~G~y~~~~-~~~~~gl~l~~~~iDLRlf~ 115 (354) T 2hq2_A 41 REAELAFARV----THDAWRMHGDIREILAALESVGETKCICRNEYAVHEQVGTFTNQH-LNGHAGLILNPRALDLRLFL 115 (354) T ss_dssp CHHHHHHHHB----TTTEEEECSCHHHHHHHHGGGCCEEEEEECSSEEEEEEECCCSEE-CSSSSEEECCTTSCCEEECG T ss_pred CHHHHHHCCC----CCCEEECCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCC-CCCCEEEEECCCCCEEEEEC T ss_conf 8999986036----775488178999999976750856899805857999987516855-37833578658752048881 Q ss_pred ----------------------EE---EEEE--EEECCCHHHHHHHHHHHHHHHC Q ss_conf ----------------------12---0034--4525768999999999999968 Q gi|254780269|r 109 ----------------------FF---GESM--FSHMENASKICLTHLVKHLKKR 136 (179) Q Consensus 109 ----------------------F~---GESM--Fs~~~nASKiAl~~L~~~l~~~ 136 (179) || |+.. .+..++....|+-.|+..++.. T Consensus 116 ~~W~~~faV~e~~~~g~r~SlQFFD~~G~AVhKIylt~~Sd~~A~~~Lv~~~~~~ 170 (354) T 2hq2_A 116 NQWASVFHIKENTARGERQSIQFFDHQGDALLKVYATDNTDMAAWSELLARFITD 170 (354) T ss_dssp GGEEEEEEEEECCTTSCEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCS T ss_pred CCEEEEEEEEECCCCCCEEEEEEECCCCHHHHEEECCCCCCHHHHHHHHHHHHCC T ss_conf 1005999998427898537899997638120145417999889999999986374 No 12 >3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2k1d_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2kfo_A 2k5o_A 2kfm_A 2kfl_A Probab=26.05 E-value=15 Score=17.40 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.4 Q ss_pred CCCEEEEEEEEEECCCEEEEEE Q ss_conf 3720121102320572120034 Q gi|254780269|r 93 KDVLVGGLYGVSLGAVFFGESM 114 (179) Q Consensus 93 ~~~LvGGlyGv~iG~~F~GESM 114 (179) .|.+|||+-|..||++|-+-.| T Consensus 29 aGAv~G~~~GY~lG~a~~rp~~ 50 (142) T 3heq_A 29 AGAVVGGLGGYMLGSAMSRPII 50 (142) T ss_dssp --------CCCEECCCCCCCCC T ss_pred HHHHHHCCHHHHHCCCCCCCCC T ss_conf 5335413201311246788876 No 13 >1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4 Probab=25.34 E-value=37 Score=15.00 Aligned_cols=145 Identities=6% Similarity=-0.018 Sum_probs=83.0 Q ss_pred CCCCEEEEHH-----HC--CCCHHHHHHHHC---CCCEEEECC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 9961874244-----46--117457765215---881687669--88999999850266889987269999999999864 Q gi|254780269|r 15 PLRRGIIPLE-----TF--HTPKRLKKYIRR---ELYDIRINT--AFESVISACAQKTQKRPTTWINMTIQKAYIDLFYM 82 (179) Q Consensus 15 P~~R~il~~~-----~~--hisrsLrk~lrk---~~~~itin~--~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~ 82 (179) |.--.++.+. ++ ..+++.|+.+|+ ...+++..+ +++...+....+.+.++-...+.+.-+...+... T Consensus 155 ~~~t~~idL~~~s~d~l~~~~~~~~R~~Irka~k~gv~i~~~~~edl~~f~~l~~~t~~R~g~~~~~~~yf~~l~~~~~- 233 (426) T 1lrz_A 155 IRYHSVLDLKDKTADDIIKNMDGLRKRNTKKVKKNGVKVRFLSEEELPIFRSFMEDTSESKAFADRDDKFYYNRLKYYK- 233 (426) T ss_dssp CSEEEEEECTTCCHHHHHHTSCHHHHHHHHHHHTSSCEEEECCGGGHHHHHHHC------------CHHHHHHHHHHHG- T ss_pred CCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC- T ss_conf 4249998678999899987557878999999986692999646457999999999999706999899999999998515- Q ss_pred CCEEEEEEE-----------------------------------------------------------------ECCCEE Q ss_conf 982699996-----------------------------------------------------------------537201 Q gi|254780269|r 83 GYAHTIEAW-----------------------------------------------------------------KKDVLV 97 (179) Q Consensus 83 G~aHSvE~w-----------------------------------------------------------------~~~~Lv 97 (179) ..++-+-++ .+++.| T Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 313 (426) T 1lrz_A 234 DRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPI 313 (426) T ss_dssp GGEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE T ss_pred CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 66279987502578999888877777777888887764251023320103557889998886666777888850699579 Q ss_pred EEEEEEEECCCEE---EEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE-CCCC------------HHHHHCCCEEECH Q ss_conf 2110232057212---003445-257689999999999999689739990-7589------------3477119798369 Q gi|254780269|r 98 GGLYGVSLGAVFF---GESMFS-HMENASKICLTHLVKHLKKRQFLLLDI-QFIT------------NHLRQFGAIEITH 160 (179) Q Consensus 98 GGlyGv~iG~~F~---GESMFs-~~~nASKiAl~~L~~~l~~~g~~liD~-Q~~t------------~HL~slGa~~i~r 160 (179) +|..-+.-|.... |=|.=. +.-.|+...++...+.++.+|+...|- .+.+ ..+.+||+..++. T Consensus 314 a~~l~~~~~~~~~y~y~gs~~~~~~~~~~~~l~w~~i~~a~~~G~~~yd~gGi~~~~~~~~~~~Gl~~FK~~fgg~~~~~ 393 (426) T 1lrz_A 314 SAGFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYNAEIIEY 393 (426) T ss_dssp EEEEEEECSSCEEEEEEEECGGGGGGCHHHHHHHHHHHHHHHTTCCEEEEEECCSCCSTTCTTHHHHHHHHTTTCEEEEE T ss_pred EEEEEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE T ss_conf 99999998999999952314766734925999999999999879989981798688787776642899986179905887 No 14 >1wb0_A Chitinase 1, chitotriosidase 1; hydrolase, human chitinase, argadin, cyclopentapeptide inhibitors, chitinase inhibitors, alternative splicing; HET: RAG; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Probab=23.32 E-value=41 Score=14.77 Aligned_cols=90 Identities=19% Similarity=0.366 Sum_probs=49.3 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEC--CCHHHHHHH-HHHHHHHHCCCEEE Q ss_conf 987269999999999864982699996537201211023205721200344525--768999999-99999996897399 Q gi|254780269|r 65 TTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHM--ENASKICLT-HLVKHLKKRQFLLL 141 (179) Q Consensus 65 ~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~--~nASKiAl~-~L~~~l~~~g~~li 141 (179) ..|-.+.+.+.+..|.+..-. +.+ =++|||-=.+-..||.. +.+..-+|+ .++.+++..||+=| T Consensus 48 ~~~~d~~~~~~~~~Lk~~np~--lKv-----------llsiGGw~~~s~~Fs~~a~~~~~R~~Fi~s~v~~l~~~~fDGi 114 (445) T 1wb0_A 48 TEWNDETLYQEFNGLKKMNPK--LKT-----------LLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114 (445) T ss_dssp SSTTHHHHHHHHHHGGGTCTT--CEE-----------EEEEECTTTCSHHHHHHHTSHHHHHHHHHHHHHHHHHTTCCEE T ss_pred CCCCCHHHHHHHHHHHHHCCC--CEE-----------EEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 364518899999999986899--769-----------9999389778706878866999999999999999998299837 Q ss_pred EECCCCHHHHHCCCEEECHHHHHHHHHH Q ss_conf 9075893477119798369999999999 Q gi|254780269|r 142 DIQFITNHLRQFGAIEITHVQYAKLLEN 169 (179) Q Consensus 142 D~Q~~t~HL~slGa~~i~r~~fl~~L~~ 169 (179) |.-|.-|- +-|.....++.|..+|++ T Consensus 115 DiDWEyP~--~~g~~~~D~~nf~~ll~e 140 (445) T 1wb0_A 115 DLDWEYPG--SQGSPAVDKERFTTLVQD 140 (445) T ss_dssp EEECSCTT--STTCCTTHHHHHHHHHHH T ss_pred EECCCCCC--CCCCCCCHHHHHHHHHHH T ss_conf 72251354--468880156779999999 No 15 >1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1 Probab=21.53 E-value=19 Score=16.79 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.6 Q ss_pred ECCCEEEEEEEEEECCCEEEEEE Q ss_conf 53720121102320572120034 Q gi|254780269|r 92 KKDVLVGGLYGVSLGAVFFGESM 114 (179) Q Consensus 92 ~~~~LvGGlyGv~iG~~F~GESM 114 (179) -.|.+|||+-|..+|++|-+-.| T Consensus 21 a~GAvvG~~gGY~lG~a~~rp~~ 43 (130) T 1xu0_A 21 AIGAAAGAIGGYMLGNAVGRMSY 43 (130) T ss_dssp --------CCEEEEEEECCSCCC T ss_pred HHHHHHHCCCHHHHCCCCCCCCC T ss_conf 87777750000212035788866 Done!