Query         gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 179
No_of_seqs    123 out of 910
Neff          4.9 
Searched_HMMs 23785
Date          Tue May 24 10:25:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780269.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2cxa_A Leucyl/phenylalanyl-tRN 100.0       0       0  513.7  22.2  171    1-175    66-236 (256)
  2 3gkr_A FEMX; peptidoglycan, he  96.3   0.073 3.1E-06   31.6  12.3  141   15-158   145-314 (336)
  3 2v26_A Myosin VI; calmodulin-b  50.4     9.7 0.00041   18.6   2.8   85   50-155   105-190 (784)
  4 2j0p_A HEMS, hemin transport p  38.1      21  0.0009   16.5   3.0   87   45-136    28-160 (345)
  5 1kkh_A Mevalonate kinase; mixe  36.9      24   0.001   16.2   4.9   44  101-147   274-317 (317)
  6 1tpx_A Prion protein, major pr  34.1       8 0.00034   19.1   0.3   22   93-114     8-29  (121)
  7 1euv_A ULP1 protease; SUMO hyd  32.7      21 0.00087   16.6   2.2   18   63-80     44-61  (221)
  8 2dfs_A Myosin-5A; myosin-V, in  31.7     8.7 0.00037   18.9   0.2   63   50-132   121-183 (1080)
  9 2fr1_A Erythromycin synthase,   29.1      32  0.0013   15.4   5.7   57  120-176   375-443 (486)
 10 1u3m_A CHPRP, prion-like prote  28.9      12 0.00051   18.0   0.5   26   94-119     1-26  (117)
 11 2hq2_A Putative heme/hemoglobi  28.5      25  0.0011   16.0   2.1   84   48-136    41-170 (354)
 12 3heq_A Major prion protein; ce  26.1      15 0.00064   17.4   0.6   22   93-114    29-50  (142)
 13 1lrz_A FEMA, factor essential   25.3      37  0.0016   15.0  13.5  145   15-160   155-393 (426)
 14 1wb0_A Chitinase 1, chitotrios  23.3      41  0.0017   14.8   2.7   90   65-169    48-140 (445)
 15 1xu0_A Prion protein, XLPRP; a  21.5      19  0.0008   16.8   0.4   23   92-114    21-43  (130)

No 1  
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=100.00  E-value=0  Score=513.68  Aligned_cols=171  Identities=36%  Similarity=0.607  Sum_probs=164.5

Q ss_pred             CCCCCCCCEEEEECCCCCEEEEHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             98887887078873996187424446117457765215881687669889999998502668899872699999999998
Q gi|254780269|r    1 MADSANSQDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLF   80 (179)
Q Consensus         1 Mad~~d~~~i~WwsP~~R~il~~~~~hisrsLrk~lrk~~~~itin~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh   80 (179)
                      |++  +++||+||||+||+||+|++|||||||||.+|++.|+||+|++|++||++||.++  +++||||++|+++|++||
T Consensus        66 w~~--~~~pi~WwsP~pR~Vl~p~~~hisrSLrk~lr~~~f~it~d~~F~~VI~~Ca~~r--~~~TWI~~eii~aY~~LH  141 (256)
T 2cxa_A           66 WFS--PGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDR--EEGTWITRGVVEAYHRLH  141 (256)
T ss_dssp             CCC--TTSCCEEECCSSEEEECGGGCCCCHHHHHHHHTCCCEEEESSCHHHHHHHHHTC-----CTTCCHHHHHHHHHHH
T ss_pred             CCC--CCCCEEEECCCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHH
T ss_conf             788--9996379827986686777643677788775569759987864799998427889--898478879999999999


Q ss_pred             HCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCEEECH
Q ss_conf             64982699996537201211023205721200344525768999999999999968973999075893477119798369
Q gi|254780269|r   81 YMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFITNHLRQFGAIEITH  160 (179)
Q Consensus        81 ~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t~HL~slGa~~i~r  160 (179)
                      ++|+|||||||++++||||+|||+||++||||||||+++|||||||++|+++|+.+||.|||||++||||+||||++|||
T Consensus       142 ~~G~AHSVEvW~~~~LVGGlYGv~iG~~F~GESMFs~~~nASKvAL~~L~~~L~~~g~~liDcQ~~t~HL~slGA~~I~R  221 (256)
T 2cxa_A          142 ELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPR  221 (256)
T ss_dssp             HTTSEEEEEEEETTEEEEEEEEEEETTEEEEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEESCCHHHHHTTCEEECH
T ss_pred             HCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCEEECH
T ss_conf             67936999999899888635799768858723410306762599999999999977992999676987798529999589


Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999999983899
Q gi|254780269|r  161 VQYAKLLENALKHPE  175 (179)
Q Consensus       161 ~~fl~~L~~al~~p~  175 (179)
                      ++|+++|++++.+|.
T Consensus       222 ~eFl~~L~~~~~~~~  236 (256)
T 2cxa_A          222 RDYLNYLNQMRLGRL  236 (256)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999970789


No 2  
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1 UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A 1p4n_A* 1xix_A 1xf8_A 1xe4_A
Probab=96.26  E-value=0.073  Score=31.56  Aligned_cols=141  Identities=14%  Similarity=0.104  Sum_probs=86.2

Q ss_pred             CCCCEEEEHHHC--------CCCHHHHHHHHC---CCCEEEECCCHHH------HHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             996187424446--------117457765215---8816876698899------99998502668899872699999999
Q gi|254780269|r   15 PLRRGIIPLETF--------HTPKRLKKYIRR---ELYDIRINTAFES------VISACAQKTQKRPTTWINMTIQKAYI   77 (179)
Q Consensus        15 P~~R~il~~~~~--------hisrsLrk~lrk---~~~~itin~~F~~------VI~~Ca~~r~~~~~TWI~~~i~~aY~   77 (179)
                      |.-..+++++..        ..+++.|+.+||   +..+++.....++      +...-.. |  ......+.+..+...
T Consensus       145 ~r~t~~~~l~~~~~~~~~~~~~~~~~R~~irka~k~g~~~~~~~~~~dl~~~~~~~~~~~~-r--~g~~~~~~~~~~~l~  221 (336)
T 3gkr_A          145 PRLNMVLDLTKFPDAKTTLDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAE-R--HGITHRPIEYFQRMQ  221 (336)
T ss_dssp             CSEEEEEEGGGCTTCCSGGGGSCHHHHHHHHHHHHTTEEEEEECSHHHHHHHHHHHHHHHH-H--HTCCCCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH-H--CCCCCCCHHHHHHHH
T ss_conf             3159999888898889999865987899999998759789965872777899999999998-5--366679999999999


Q ss_pred             HHHHCCCEEEEEEEECCCEEEEEEEEEECCCEE---EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCC-----C--
Q ss_conf             998649826999965372012110232057212---003445257689999999999999689739990758-----9--
Q gi|254780269|r   78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFF---GESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFI-----T--  147 (179)
Q Consensus        78 ~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~---GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~-----t--  147 (179)
                      +....+..-=+-++.+|++|||.+.+.-|....   |=|--.....++-+.++...+.+..+|+..+|-.-.     +  
T Consensus       222 ~~~~~~~~~~~~~~~~g~~va~~l~~~~~~~~~~~~~~s~~~~~~~~~~ll~~~~i~~a~~~G~~~~DfgG~~~~~~~~g  301 (336)
T 3gkr_A          222 AAFDADTMRIFVAEREGKLLSTGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDS  301 (336)
T ss_dssp             HHSCTTTEEEEEEEETTEEEEEEEEEEETTEEEEEEEEECSSCCTTHHHHHHHHHHHHHHHTTCSEEEEEECSCSSTTCH
T ss_pred             HHCCCCCEEEEEEEECCEEEEEEEEEEECCEEEEEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf             74678856999997099699999999989999999702155545165599999999999987997998089878889952


Q ss_pred             --HHHHHCCCEEE
Q ss_conf             --34771197983
Q gi|254780269|r  148 --NHLRQFGAIEI  158 (179)
Q Consensus       148 --~HL~slGa~~i  158 (179)
                        ..+.++|+..+
T Consensus       302 l~~FK~~fg~~~~  314 (336)
T 3gkr_A          302 LYVFKHVFVKDAP  314 (336)
T ss_dssp             HHHHHHHHCCSCC
T ss_pred             HHHHHHCCCCCCC
T ss_conf             8998646599975


No 3  
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 2vb6_A* 2vas_A*
Probab=50.38  E-value=9.7  Score=18.58  Aligned_cols=85  Identities=19%  Similarity=0.176  Sum_probs=51.9

Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHH
Q ss_conf             99999985026688998726999999999986498269999653720121102320572120034452576899999999
Q gi|254780269|r   50 ESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHL  129 (179)
Q Consensus        50 ~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L  129 (179)
                      +++++.-.......-..=|+.--..||..|-..+.-.||                   +..|||. +-+|.++|..|-+|
T Consensus       105 ~~~~~~y~~~~~~~~pPHiyaiA~~Ay~~m~~~~~~QsI-------------------iisGESG-AGKTe~~K~il~yL  164 (784)
T 2v26_A          105 SETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI-------------------IVSGESG-AGKTENTKFVLRYL  164 (784)
T ss_dssp             HHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEE-------------------EEECSTT-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE-------------------EEEECCC-CCCCHHHHHHHHHH
T ss_conf             799998728986889995999999999999860899569-------------------9995268-88349999999999


Q ss_pred             HHHHHHCCCEEEEE-CCCCHHHHHCCC
Q ss_conf             99999689739990-758934771197
Q gi|254780269|r  130 VKHLKKRQFLLLDI-QFITNHLRQFGA  155 (179)
Q Consensus       130 ~~~l~~~g~~liD~-Q~~t~HL~slGa  155 (179)
                      +..-.. +..+-|. .-.||-|++||-
T Consensus       165 ~~~~~~-~~~i~~~il~snpiLEAFGN  190 (784)
T 2v26_A          165 TESYGT-GQDIDDRIVEANPLLEAFGN  190 (784)
T ss_dssp             HHHHC-------CHHHHTHHHHHHHHE
T ss_pred             HHHCCC-CCCHHHHHHHHHHHHHHHCC
T ss_conf             875379-98599989988899998358


No 4  
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=38.12  E-value=21  Score=16.50  Aligned_cols=87  Identities=13%  Similarity=0.217  Sum_probs=54.3

Q ss_pred             ECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-----------EEECCCEEEEEEEEEEC-C-----
Q ss_conf             669889999998502668899872699999999998649826999-----------96537201211023205-7-----
Q gi|254780269|r   45 INTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIE-----------AWKKDVLVGGLYGVSLG-A-----  107 (179)
Q Consensus        45 in~~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE-----------~w~~~~LvGGlyGv~iG-~-----  107 (179)
                      ++-.-.+++.++-    ++.-+.+.+++.+...+|...|...++-           +|.+.. .+|-||..+| +     
T Consensus        28 lgvSEaeLlaa~~----g~~~~rl~~~~~~ll~~l~~lG~VmaltrN~~aVhE~~G~y~~~~-~~~~~~l~l~~~~idLR  102 (345)
T 2j0p_A           28 MGISEAELTHSRV----SHDAKRLKGDARALLAALEAVGEVKAITRNTYAVHEQMGRYENQH-LNGHAGLILNPRNLDLR  102 (345)
T ss_dssp             TTSCHHHHHHHHB----TTTEEEBCSCHHHHHHHGGGGCCEEEEEECSSEEEEEEECCCSEE-CSSSEEEECCTTSSCEE
T ss_pred             CCCCHHHHHHHCC----CCCEEECCCCHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCCC-CCCCEEEEECCCCEEEE
T ss_conf             1999999997077----775698678999999977751967999806877999987658856-37866577658750589


Q ss_pred             C------------------------EE---EEEEE--EECCCHHHHHHHHHHHHHHHC
Q ss_conf             2------------------------12---00344--525768999999999999968
Q gi|254780269|r  108 V------------------------FF---GESMF--SHMENASKICLTHLVKHLKKR  136 (179)
Q Consensus       108 ~------------------------F~---GESMF--s~~~nASKiAl~~L~~~l~~~  136 (179)
                      +                        ||   |+.||  +..++....|.-.|++.+...
T Consensus       103 lf~~~w~~~faV~e~~~~g~~~SlQFFD~~G~AvhKIylt~~S~~~A~~aLv~~~~~~  160 (345)
T 2j0p_A          103 LFLNQWASAFTLTEETRHGVRHSIQFFDHQGDALHKVYVTEQTDMPAWEALLAQFITT  160 (345)
T ss_dssp             EEGGGEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCS
T ss_pred             EEHHHEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             9800201999998317899717799998889756678826888789999999986275


No 5  
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=36.92  E-value=24  Score=16.21  Aligned_cols=44  Identities=16%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             EEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             02320572120034452576899999999999996897399907589
Q gi|254780269|r  101 YGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQFLLLDIQFIT  147 (179)
Q Consensus       101 yGv~iG~~F~GESMFs~~~nASKiAl~~L~~~l~~~g~~liD~Q~~t  147 (179)
                      +|..+=|.=+|-+||...++..+-   .+...++..|+..++|++.|
T Consensus       274 ~~ak~sGaG~Gg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  317 (317)
T 1kkh_A          274 FGAKLTGAGGGGCVIILVNEEKEK---ELLKELNKEDVRIFNCRMMN  317 (317)
T ss_dssp             SEEEECSSSSSEEEEEECCGGGHH---HHHHHHHTSSCEEEEECBCC
T ss_pred             CEEEEECCCCCCEEEEEECHHHHH---HHHHHHHHCCCEEEEEEECC
T ss_conf             589980788638899998815799---99999997498399999449


No 6  
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=34.07  E-value=8  Score=19.10  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             CCCEEEEEEEEEECCCEEEEEE
Q ss_conf             3720121102320572120034
Q gi|254780269|r   93 KDVLVGGLYGVSLGAVFFGESM  114 (179)
Q Consensus        93 ~~~LvGGlyGv~iG~~F~GESM  114 (179)
                      .|.+|||+-|..||++|-+-.|
T Consensus         8 ~gav~g~~~gY~LG~amsrp~~   29 (121)
T 1tpx_A            8 AGAVVGGLGGYMLGSAMSRPLI   29 (121)
T ss_dssp             ------CCTTCEECCCCCCCCC
T ss_pred             CHHHHHHHHHHHHCCCCCCCCC
T ss_conf             1025540145543146788876


No 7  
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=32.69  E-value=21  Score=16.58  Aligned_cols=18  Identities=28%  Similarity=0.685  Sum_probs=14.5

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             899872699999999998
Q gi|254780269|r   63 RPTTWINMTIQKAYIDLF   80 (179)
Q Consensus        63 ~~~TWI~~~i~~aY~~Lh   80 (179)
                      +++.|+|.++|++|..+-
T Consensus        44 ~~~~WLnD~vI~~y~~~l   61 (221)
T 1euv_A           44 APRRWLNDTIIEFFMKYI   61 (221)
T ss_dssp             STTCCCBHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHH
T ss_conf             887535789999999999


No 8  
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=31.71  E-value=8.7  Score=18.86  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=36.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEECCCHHHHHHHHH
Q ss_conf             99999985026688998726999999999986498269999653720121102320572120034452576899999999
Q gi|254780269|r   50 ESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHL  129 (179)
Q Consensus        50 ~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~~nASKiAl~~L  129 (179)
                      +++++.......+.-..=|+.--..||..|...+--.||                   ++.|||. +-+|.++|..|-+|
T Consensus       121 ~~~~~~y~~~~~~~~~PHi~ava~~Ay~~m~~~~~~QsI-------------------iisGeSG-aGKTe~~k~il~yl  180 (1080)
T 2dfs_A          121 EDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSI-------------------IVSGESG-AGKTVSAKYAMRYF  180 (1080)
T ss_dssp             HHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEE-------------------EEECSTT-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE-------------------EEEECCC-CCHHHHHHHHHHHH
T ss_conf             899998738987889995889999999999972899179-------------------9985799-98899999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780269|r  130 VKH  132 (179)
Q Consensus       130 ~~~  132 (179)
                      +..
T Consensus       181 ~~~  183 (1080)
T 2dfs_A          181 ATV  183 (1080)
T ss_dssp             HHT
T ss_pred             HHH
T ss_conf             997


No 9  
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=29.05  E-value=32  Score=15.41  Aligned_cols=57  Identities=19%  Similarity=0.377  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECC------------CCHHHHHCCCEEECHHHHHHHHHHHHHCCCC
Q ss_conf             68999999999999968973999075------------8934771197983699999999999838998
Q gi|254780269|r  120 NASKICLTHLVKHLKKRQFLLLDIQF------------ITNHLRQFGAIEITHVQYAKLLENALKHPEI  176 (179)
Q Consensus       120 nASKiAl~~L~~~l~~~g~~liD~Q~------------~t~HL~slGa~~i~r~~fl~~L~~al~~p~~  176 (179)
                      -|+|.+|-.|++.++..|....-.+|            ....+.+.|-..++.++-++.|..++..+..
T Consensus       375 aAAna~ld~la~~~r~~G~~~~sI~wg~w~~~Gm~~~~~~~~~~~~G~~~l~~~~~~~~l~~~l~~~~~  443 (486)
T 2fr1_A          375 APGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQNALDRAEV  443 (486)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             999999999999998779988998788116877667379999996699888999999999999728995


No 10 
>1u3m_A CHPRP, prion-like protein; prion protein, TSE, membrane protein; NMR {Gallus gallus} SCOP: d.6.1.1
Probab=28.86  E-value=12  Score=18.00  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             CCEEEEEEEEEECCCEEEEEEEEECC
Q ss_conf             72012110232057212003445257
Q gi|254780269|r   94 DVLVGGLYGVSLGAVFFGESMFSHME  119 (179)
Q Consensus        94 ~~LvGGlyGv~iG~~F~GESMFs~~~  119 (179)
                      |..||||=|..+|++-.+-+|---.+
T Consensus         1 gsvvgglggYmlGsaMsr~~~hF~n~   26 (117)
T 1u3m_A            1 GSVVGGLGGYAMGRVMSGMNYHFDRP   26 (117)
T ss_dssp             CCSSSCSSCCEECCCCCCCSCCCCSH
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCH
T ss_conf             96223520455432322675557984


No 11 
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat, structural genomics; HET: HEM; 1.45A {Escherichia coli O157} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=28.53  E-value=25  Score=16.03  Aligned_cols=84  Identities=15%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE----------E-EEECCCEEEEEEEEEECC------C--
Q ss_conf             88999999850266889987269999999999864982699----------9-965372012110232057------2--
Q gi|254780269|r   48 AFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTI----------E-AWKKDVLVGGLYGVSLGA------V--  108 (179)
Q Consensus        48 ~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~G~aHSv----------E-~w~~~~LvGGlyGv~iG~------~--  108 (179)
                      -=.+++.++.    ++.-+=+..+..+...+|-..|...++          - +|.+.+ .+|-||..+|.      +  
T Consensus        41 SEaeLvaA~~----g~~v~rL~~~~~~ll~~l~~lG~VmalTRN~~aVhE~~G~y~~~~-~~~~~gl~l~~~~iDLRlf~  115 (354)
T 2hq2_A           41 REAELAFARV----THDAWRMHGDIREILAALESVGETKCICRNEYAVHEQVGTFTNQH-LNGHAGLILNPRALDLRLFL  115 (354)
T ss_dssp             CHHHHHHHHB----TTTEEEECSCHHHHHHHHGGGCCEEEEEECSSEEEEEEECCCSEE-CSSSSEEECCTTSCCEEECG
T ss_pred             CHHHHHHCCC----CCCEEECCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEEECCCCC-CCCCEEEEECCCCCEEEEEC
T ss_conf             8999986036----775488178999999976750856899805857999987516855-37833578658752048881


Q ss_pred             ----------------------EE---EEEE--EEECCCHHHHHHHHHHHHHHHC
Q ss_conf             ----------------------12---0034--4525768999999999999968
Q gi|254780269|r  109 ----------------------FF---GESM--FSHMENASKICLTHLVKHLKKR  136 (179)
Q Consensus       109 ----------------------F~---GESM--Fs~~~nASKiAl~~L~~~l~~~  136 (179)
                                            ||   |+..  .+..++....|+-.|+..++..
T Consensus       116 ~~W~~~faV~e~~~~g~r~SlQFFD~~G~AVhKIylt~~Sd~~A~~~Lv~~~~~~  170 (354)
T 2hq2_A          116 NQWASVFHIKENTARGERQSIQFFDHQGDALLKVYATDNTDMAAWSELLARFITD  170 (354)
T ss_dssp             GGEEEEEEEEECCTTSCEEEEEEEETTSCEEEEEECCTTSCHHHHHHHHHHHBCS
T ss_pred             CCEEEEEEEEECCCCCCEEEEEEECCCCHHHHEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             1005999998427898537899997638120145417999889999999986374


No 12 
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2k1d_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2kfo_A 2k5o_A 2kfm_A 2kfl_A
Probab=26.05  E-value=15  Score=17.40  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=18.4

Q ss_pred             CCCEEEEEEEEEECCCEEEEEE
Q ss_conf             3720121102320572120034
Q gi|254780269|r   93 KDVLVGGLYGVSLGAVFFGESM  114 (179)
Q Consensus        93 ~~~LvGGlyGv~iG~~F~GESM  114 (179)
                      .|.+|||+-|..||++|-+-.|
T Consensus        29 aGAv~G~~~GY~lG~a~~rp~~   50 (142)
T 3heq_A           29 AGAVVGGLGGYMLGSAMSRPII   50 (142)
T ss_dssp             --------CCCEECCCCCCCCC
T ss_pred             HHHHHHCCHHHHHCCCCCCCCC
T ss_conf             5335413201311246788876


No 13 
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.34  E-value=37  Score=15.00  Aligned_cols=145  Identities=6%  Similarity=-0.018  Sum_probs=83.0

Q ss_pred             CCCCEEEEHH-----HC--CCCHHHHHHHHC---CCCEEEECC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             9961874244-----46--117457765215---881687669--88999999850266889987269999999999864
Q gi|254780269|r   15 PLRRGIIPLE-----TF--HTPKRLKKYIRR---ELYDIRINT--AFESVISACAQKTQKRPTTWINMTIQKAYIDLFYM   82 (179)
Q Consensus        15 P~~R~il~~~-----~~--hisrsLrk~lrk---~~~~itin~--~F~~VI~~Ca~~r~~~~~TWI~~~i~~aY~~Lh~~   82 (179)
                      |.--.++.+.     ++  ..+++.|+.+|+   ...+++..+  +++...+....+.+.++-...+.+.-+...+... 
T Consensus       155 ~~~t~~idL~~~s~d~l~~~~~~~~R~~Irka~k~gv~i~~~~~edl~~f~~l~~~t~~R~g~~~~~~~yf~~l~~~~~-  233 (426)
T 1lrz_A          155 IRYHSVLDLKDKTADDIIKNMDGLRKRNTKKVKKNGVKVRFLSEEELPIFRSFMEDTSESKAFADRDDKFYYNRLKYYK-  233 (426)
T ss_dssp             CSEEEEEECTTCCHHHHHHTSCHHHHHHHHHHHTSSCEEEECCGGGHHHHHHHC------------CHHHHHHHHHHHG-
T ss_pred             CCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-
T ss_conf             4249998678999899987557878999999986692999646457999999999999706999899999999998515-


Q ss_pred             CCEEEEEEE-----------------------------------------------------------------ECCCEE
Q ss_conf             982699996-----------------------------------------------------------------537201
Q gi|254780269|r   83 GYAHTIEAW-----------------------------------------------------------------KKDVLV   97 (179)
Q Consensus        83 G~aHSvE~w-----------------------------------------------------------------~~~~Lv   97 (179)
                      ..++-+-++                                                                 .+++.|
T Consensus       234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  313 (426)
T 1lrz_A          234 DRVLVPLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEHGNELPI  313 (426)
T ss_dssp             GGEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             66279987502578999888877777777888887764251023320103557889998886666777888850699579


Q ss_pred             EEEEEEEECCCEE---EEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEE-CCCC------------HHHHHCCCEEECH
Q ss_conf             2110232057212---003445-257689999999999999689739990-7589------------3477119798369
Q gi|254780269|r   98 GGLYGVSLGAVFF---GESMFS-HMENASKICLTHLVKHLKKRQFLLLDI-QFIT------------NHLRQFGAIEITH  160 (179)
Q Consensus        98 GGlyGv~iG~~F~---GESMFs-~~~nASKiAl~~L~~~l~~~g~~liD~-Q~~t------------~HL~slGa~~i~r  160 (179)
                      +|..-+.-|....   |=|.=. +.-.|+...++...+.++.+|+...|- .+.+            ..+.+||+..++.
T Consensus       314 a~~l~~~~~~~~~y~y~gs~~~~~~~~~~~~l~w~~i~~a~~~G~~~yd~gGi~~~~~~~~~~~Gl~~FK~~fgg~~~~~  393 (426)
T 1lrz_A          314 SAGFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYNAEIIEY  393 (426)
T ss_dssp             EEEEEEECSSCEEEEEEEECGGGGGGCHHHHHHHHHHHHHHHTTCCEEEEEECCSCCSTTCTTHHHHHHHHTTTCEEEEE
T ss_pred             EEEEEEEECCEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
T ss_conf             99999998999999952314766734925999999999999879989981798688787776642899986179905887


No 14 
>1wb0_A Chitinase 1, chitotriosidase 1; hydrolase, human chitinase, argadin, cyclopentapeptide inhibitors, chitinase inhibitors, alternative splicing; HET: RAG; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=23.32  E-value=41  Score=14.77  Aligned_cols=90  Identities=19%  Similarity=0.366  Sum_probs=49.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEC--CCHHHHHHH-HHHHHHHHCCCEEE
Q ss_conf             987269999999999864982699996537201211023205721200344525--768999999-99999996897399
Q gi|254780269|r   65 TTWINMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHM--ENASKICLT-HLVKHLKKRQFLLL  141 (179)
Q Consensus        65 ~TWI~~~i~~aY~~Lh~~G~aHSvE~w~~~~LvGGlyGv~iG~~F~GESMFs~~--~nASKiAl~-~L~~~l~~~g~~li  141 (179)
                      ..|-.+.+.+.+..|.+..-.  +.+           =++|||-=.+-..||..  +.+..-+|+ .++.+++..||+=|
T Consensus        48 ~~~~d~~~~~~~~~Lk~~np~--lKv-----------llsiGGw~~~s~~Fs~~a~~~~~R~~Fi~s~v~~l~~~~fDGi  114 (445)
T 1wb0_A           48 TEWNDETLYQEFNGLKKMNPK--LKT-----------LLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGL  114 (445)
T ss_dssp             SSTTHHHHHHHHHHGGGTCTT--CEE-----------EEEEECTTTCSHHHHHHHTSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCCHHHHHHHHHHHHHCCC--CEE-----------EEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             364518899999999986899--769-----------9999389778706878866999999999999999998299837


Q ss_pred             EECCCCHHHHHCCCEEECHHHHHHHHHH
Q ss_conf             9075893477119798369999999999
Q gi|254780269|r  142 DIQFITNHLRQFGAIEITHVQYAKLLEN  169 (179)
Q Consensus       142 D~Q~~t~HL~slGa~~i~r~~fl~~L~~  169 (179)
                      |.-|.-|-  +-|.....++.|..+|++
T Consensus       115 DiDWEyP~--~~g~~~~D~~nf~~ll~e  140 (445)
T 1wb0_A          115 DLDWEYPG--SQGSPAVDKERFTTLVQD  140 (445)
T ss_dssp             EEECSCTT--STTCCTTHHHHHHHHHHH
T ss_pred             EECCCCCC--CCCCCCCHHHHHHHHHHH
T ss_conf             72251354--468880156779999999


No 15 
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=21.53  E-value=19  Score=16.79  Aligned_cols=23  Identities=22%  Similarity=0.160  Sum_probs=18.6

Q ss_pred             ECCCEEEEEEEEEECCCEEEEEE
Q ss_conf             53720121102320572120034
Q gi|254780269|r   92 KKDVLVGGLYGVSLGAVFFGESM  114 (179)
Q Consensus        92 ~~~~LvGGlyGv~iG~~F~GESM  114 (179)
                      -.|.+|||+-|..+|++|-+-.|
T Consensus        21 a~GAvvG~~gGY~lG~a~~rp~~   43 (130)
T 1xu0_A           21 AIGAAAGAIGGYMLGNAVGRMSY   43 (130)
T ss_dssp             --------CCEEEEEEECCSCCC
T ss_pred             HHHHHHHCCCHHHHCCCCCCCCC
T ss_conf             87777750000212035788866


Done!