RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62] (179 letters) >gnl|CDD|32507 COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]. Length = 221 Score = 220 bits (562), Expect = 2e-58 Identities = 78/171 (45%), Positives = 104/171 (60%) Query: 8 QDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTW 67 + W P R ++P + FH + LKK++R+ Y +R+N AF +VI CA R TW Sbjct: 44 DPLLWWSPDPRAVLPPDDFHISRSLKKFLRQSPYRVRVNYAFAAVIEGCAATRPPRDGTW 103 Query: 68 INMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLT 127 IN I++AY L MG+AH++E W+ D LVGGLYGV+LG FFGESMFS NASKI L Sbjct: 104 INDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESMFSRATNASKIALV 163 Query: 128 HLVKHLKKRQFLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEISF 178 HLV+HL++ F+L+D Q + HL GA EI +Y L A + F Sbjct: 164 HLVEHLRRHGFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRRAEQPLPSEF 214 >gnl|CDD|112407 pfam03588, Leu_Phe_trans, Leucyl/phenylalanyl-tRNA protein transferase. Length = 173 Score = 196 bits (500), Expect = 3e-51 Identities = 72/152 (47%), Positives = 95/152 (62%) Query: 8 QDISWIKPLRRGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTW 67 + W P R ++P + H K LKK +R+ + + I+ AFE+VI CA K + + TW Sbjct: 21 CPLLWWSPDPRAVLPPDEIHISKSLKKTLRQSPFRVTIDYAFEAVIEGCAAKRRNQDGTW 80 Query: 68 INMTIQKAYIDLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLT 127 I Q+AY L MGYAH++E W+ D LVGG+YGV+LG VFFGESMFS NASKI L Sbjct: 81 ITEEFQEAYYKLHTMGYAHSVEVWRGDELVGGIYGVALGRVFFGESMFSRKPNASKIALV 140 Query: 128 HLVKHLKKRQFLLLDIQFITNHLRQFGAIEIT 159 LV+ L F L+D Q + HL++FGA EI Sbjct: 141 KLVELLIDHGFELIDCQVLNPHLKRFGAEEIP 172 >gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.. Length = 359 Score = 29.8 bits (68), Expect = 0.46 Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 13 IKPLRRGIIPLETFHTPKRLKKYIRRELYDI 43 I RRGI P + RL + +R+E DI Sbjct: 53 IPLDRRGINPFKDLKALLRLYRLLRKERPDI 83 >gnl|CDD|147669 pfam05634, DUF794, Arabidopsis thaliana protein of unknown function (DUF794). This family consists of several proteins of unknown function from Arabidopsis thaliana. Length = 378 Score = 29.0 bits (65), Expect = 0.75 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 4 SANSQDISWIKPLRRGI-IPLETFHTPKRLKKYIR-RELYDI-RINTAFESVISA 55 S+ + W+ + +P+E++H R K I+ E +D+ RI E I A Sbjct: 128 SSRNGLHEWVPGSINDVLVPVESYHLFDRFGKRIKHDERFDVPRIPAVLELCIQA 182 >gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General function prediction only]. Length = 399 Score = 26.5 bits (58), Expect = 4.7 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 68 INMTIQKAYIDLFYMGYAH-TIEAWKKDVLVGGLY-GVSLGAVFFGESMFSHMENASKIC 125 I+ I+ AY + YM E W+ G+ G + G+ +++ + Sbjct: 51 ISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANL 110 Query: 126 LTHLVKH 132 + H Sbjct: 111 KRKGLAH 117 >gnl|CDD|34841 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]. Length = 669 Score = 26.3 bits (57), Expect = 5.6 Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 23 LETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQ 73 LE F + + ++ ELY ++ F + AQ ++ I+ Sbjct: 266 LEKFQSLELKVNTLQEELYQNKLLKKFYQIYEPFAQAALSSQLQYLAEVIE 316 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.138 0.415 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,237,621 Number of extensions: 111651 Number of successful extensions: 375 Number of sequences better than 10.0: 1 Number of HSP's gapped: 375 Number of HSP's successfully gapped: 9 Length of query: 179 Length of database: 6,263,737 Length adjustment: 88 Effective length of query: 91 Effective length of database: 4,362,145 Effective search space: 396955195 Effective search space used: 396955195 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 54 (24.7 bits)