RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780269|ref|YP_003064682.1| leucyl/phenylalanyl-tRNA--protein transferase [Candidatus Liberibacter asiaticus str. psy62] (179 letters) >2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} (A:79-256) Length = 178 Score = 200 bits (510), Expect = 1e-52 Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 2/157 (1%) Query: 18 RGIIPLETFHTPKRLKKYIRRELYDIRINTAFESVISACAQKTQKRPTTWINMTIQKAYI 77 R ++ E+ H + K++ +R Y + N AF VI CA + TWI + +AY Sbjct: 3 RAVLWPESLHISRSXKRFHKRSPYRVTXNYAFGQVIEGCAS--DREEGTWITRGVVEAYH 60 Query: 78 DLFYMGYAHTIEAWKKDVLVGGLYGVSLGAVFFGESMFSHMENASKICLTHLVKHLKKRQ 137 L +G+AH+IE W++D LVGG YGV+ G +F GES FS ENASK L + Sbjct: 61 RLHELGHAHSIEVWREDELVGGXYGVAQGTLFCGESXFSRXENASKTALLVFCEEFIGHG 120 Query: 138 FLLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHP 174 L+D Q + +H GA EI Y L Sbjct: 121 GKLIDCQVLNDHTASLGACEIPRRDYLNYLNQXRLGR 157 >3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A* (A:1-106) Length = 106 Score = 25.2 bits (55), Expect = 5.8 Identities = 7/38 (18%), Positives = 15/38 (39%) Query: 139 LLLDIQFITNHLRQFGAIEITHVQYAKLLENALKHPEI 176 LL + F ++ G + + A + +HP + Sbjct: 64 LLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV 101 >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:1-111,A:185-343) Length = 270 Score = 25.0 bits (54), Expect = 6.7 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%) Query: 42 DIRINTAFESVISACAQKTQKRPTTWINMTIQKAYIDLFYMGYAHTIEAWKKDVL 96 +++ E + + Q KR WI + Y+ A + W + Sbjct: 190 TVKLEDCIERMKTRTRQYA-KRQVKWIKKMLIPDIKGDIYLLDATDLSQWDTNAS 243 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.138 0.415 Gapped Lambda K H 0.267 0.0630 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,358,557 Number of extensions: 55895 Number of successful extensions: 141 Number of sequences better than 10.0: 1 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 7 Length of query: 179 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 96 Effective length of database: 2,150,234 Effective search space: 206422464 Effective search space used: 206422464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.0 bits)