254780270
ATP-dependent protease La
GeneID in NCBI database: | 8209251 | Locus tag: | CLIBASIA_00775 |
Protein GI in NCBI database: | 254780270 | Protein Accession: | YP_003064683.1 |
Gene range: | -(151069, 153531) | Protein Length: | 820aa |
Gene description: | ATP-dependent protease La | ||
COG prediction: | [O] ATP-dependent Lon protease, bacterial type | ||
KEGG prediction: | lon; ATP-dependent protease La; K01338 ATP-dependent Lon protease [EC:3.4.21.53] | ||
SEED prediction: | ATP-dependent protease La (EC 3.4.21.53) Type I | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Proteasome bacterial;
Proteolysis in bacteria, ATP-dependent | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 820 | ATP-dependent protease La [Candidatus Liberibacter asia | |||
254780877 | 853 | ATP-dependent Clp protease, ATP-binding subunit pr | 8e-05 | ||
254780545 | 647 | metalloprotease [Candidatus Liberibacter asiaticus | 1e-04 | ||
254780552 | 334 | Holliday junction DNA helicase RuvB [Candidatus Li | 4e-04 | ||
254780163 | 798 | ATP-dependent Clp protease ATP-binding subunit [Ca | 5e-04 | ||
254780163 | 798 | ATP-dependent Clp protease ATP-binding subunit [Ca | 0.002 | ||
254780334 | 479 | DNA repair protein RadA [Candidatus Liberibacter a | 0.023 |
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 | Back alignment |
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Score = 40.8 bits (94), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 21/131 (16%) Query: 369 LCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425 F+GP GVGKT L +S+A+ +R+ + ++ + IGS PG + Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSV----SRLIGSPPGYVGY 656 Query: 426 ----SLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYD 479 +L A R +P ++L DEI+K SD+ LL+VLD + + + D Sbjct: 657 EEGGALTEAVRRHPYQVVLFDEIEKAHSDVHN----ILLQVLDDGRLTDSQGRTV----D 708 Query: 480 LSDVMFIMTAN 490 + + IMT+N Sbjct: 709 FRNTLIIMTSN 719 |
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 | Back alignment |
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Score = 40.4 bits (93), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%) Query: 339 QDHFGLEKVKE---RIIEYLAVQMRVIKNKGLI---LCFVGPPGVGKTSLAQSIAKATGR 392 +D G+++ KE I+++L + + G I + VGPPG GKT LA+++A Sbjct: 148 KDVAGVDEAKEDLQEIVDFLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGEANV 207 Query: 393 QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMG 446 + +S G + E ++G R+ ++AK ++P ++ +DEID +G Sbjct: 208 PFFTIS-GSDFVE--------LFVGVGASRVRDMFEQAKNNSPCIVFVDEIDAVG 253 |
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 | Back alignment |
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Score = 38.5 bits (88), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 40/182 (21%) Query: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLK 428 + FVGPPG+GKT+LAQ +A+ G + R + G V +A G + ++ R + Sbjct: 57 VLFVGPPGLGKTTLAQVVARELGVNF-RSTSGPVIAKA---GDLAALLTNLEDRDV---- 108 Query: 429 RAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYL-------EVEYDLS 481 L +DEI ++ S + E+L PA +D + V+ +LS Sbjct: 109 --------LFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLS 152 Query: 482 DVMFIMTANTLNIPL---PLMDRMEI-IRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEE 537 F + A T + L PL DR I IR+ Y E E L+ K LT A+ E Sbjct: 153 --RFTLIAATTRVGLLTNPLQDRFGIPIRLNFY-EIEDLKTIVQRGAK--LTGLAVTDEA 207 Query: 538 CC 539 C Sbjct: 208 AC 209 |
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 | Back alignment |
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Score = 38.1 bits (87), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 14/102 (13%) Query: 368 ILCFV--GPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIR---GHRRTYIGSMPGR 422 I C+V GP GVGKT +++ +A A G Q +R + + + G Y+G G Sbjct: 507 IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGG 566 Query: 423 IIQSLKRAKRSNP--LLLLDEIDKMGSDLRGDPSAALLEVLD 462 I L + NP ++LLDEI+K D+ LL+++D Sbjct: 567 I---LADSVDQNPYSVVLLDEIEKSHPDVLN----ILLQIMD 601 |
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 | Back alignment |
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Score = 36.6 bits (83), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILC------ 370 G D ++KT NL A+ D EKVK+ ++ L + I ILC Sbjct: 170 GFVNDYQAKTDLNLFPALSAYCVDL--TEKVKKGKVDILVGRHEEINRTIQILCRRSKNN 227 Query: 371 --FVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRGHRRTYIGS 418 +VG PGVGKT++A+ AK G + + +G + I G R Y G Sbjct: 228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGTR--YRGD 280 Query: 419 MPGRIIQSLKRAKR-SNPLLLLDEIDKM-GSDLRGDPSAALLEVLDPAQNSSFV 470 RI + +K + +N +L +DEI + G+ S +L PA +S V Sbjct: 281 FEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV 334 |
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 | Back alignment |
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Score = 32.7 bits (73), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 675 FNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGG 734 F ++H+++ G + P+A +A+A A++S + IP+ + GE++L G V +G Sbjct: 353 FGNHDVHLNIAGGYRISE-PAADVAVAAALISSILSIPLPSDFVYFGEVSLSGSVRAVGH 411 Query: 735 LKEKLLAALRAGVTKVLIPE 754 ++++L A + G + PE Sbjct: 412 MQQRLKEAEKIGFLSGVFPE 431 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 820 | ATP-dependent protease La [Candidatus Liberibacter asia | |||
315122828 | 820 | ATP-dependent protease La [Candidatus Liberibacter sola | 1 | 0.0 | |
86357226 | 805 | ATP-dependent protease LA protein [Rhizobium etli CFN 4 | 1 | 0.0 | |
209548852 | 805 | ATP-dependent protease La [Rhizobium leguminosarum bv. | 1 | 0.0 | |
222148266 | 867 | ATP-dependent protease La [Agrobacterium vitis S4] Leng | 1 | 0.0 | |
190891274 | 805 | ATP-dependent protease La protein [Rhizobium etli CIAT | 1 | 0.0 | |
241204075 | 805 | ATP-dependent protease La [Rhizobium leguminosarum bv. | 1 | 0.0 | |
116251456 | 805 | ATP-dependent protease [Rhizobium leguminosarum bv. vic | 1 | 0.0 | |
325292628 | 805 | ATP-dependent protease La [Agrobacterium sp. H13-3] Len | 1 | 0.0 | |
15888590 | 805 | ATP-dependent protease LA [Agrobacterium tumefaciens st | 1 | 0.0 | |
222085566 | 806 | ATP-dependent protease LA protein [Agrobacterium radiob | 1 | 0.0 |
>gi|315122828|ref|YP_004063317.1| ATP-dependent protease La [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 820 | Back alignment and organism information |
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Score = 1438 bits (3722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 696/820 (84%), Positives = 765/820 (93%) Query: 1 MNQSDEKREYVTCEDESKDRCGADGIIYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEA 60 MNQ DEK+ +T E KDRC D +IYPLLPLRDIVVFP+MIVPLFVGREKS+RALDEA Sbjct: 1 MNQDDEKKIGITSESADKDRCAVDNVIYPLLPLRDIVVFPHMIVPLFVGREKSIRALDEA 60 Query: 61 MNSHKKIILVTQMNSNDENPIASSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEY 120 M SHKKI+LVTQ+NS++ENPIASSVYRIGTIVDI+QILRLPD TVKILVEGSVRARI+EY Sbjct: 61 MASHKKIVLVTQLNSDEENPIASSVYRIGTIVDILQILRLPDDTVKILVEGSVRARIIEY 120 Query: 121 IEREDFLEAITQVLPDPTEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFS 180 IEREDF+EAITQV DP ED +E+EALSRSVI+EFSNYIK NKKISPEV+G T+QIE FS Sbjct: 121 IEREDFVEAITQVCLDPVEDAIEIEALSRSVISEFSNYIKFNKKISPEVMGTTTQIEDFS 180 Query: 181 KLADVIAANLSIKVAERQKILEAVSVKERLEMLLVFMESEISVLQVEKRIRSRVKRQMEK 240 KL+DV+AANLSIKV +RQKILEA+SVKERLE+LLV ME EIS+LQ+EKRIRSRVKRQMEK Sbjct: 181 KLSDVVAANLSIKVIDRQKILEAISVKERLEILLVLMEGEISILQIEKRIRSRVKRQMEK 240 Query: 241 TQREYYLHEQMKAIQKELDNGEEGRDEISDFEARISKIRLSKEAREKALSELQKLRQMNP 300 TQREYYL+EQMKAIQKELD+GEEG DEI DFE RIS+ +LSKEAREKALSELQKLRQMNP Sbjct: 241 TQREYYLNEQMKAIQKELDDGEEGCDEIRDFEVRISRTKLSKEAREKALSELQKLRQMNP 300 Query: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMR 360 LSAESSVVRNYLDWLLGVPWDKKSKTKK+LDFA ILDQDHFGLEKVKERIIEYLAVQMR Sbjct: 301 LSAESSVVRNYLDWLLGVPWDKKSKTKKDLDFATHILDQDHFGLEKVKERIIEYLAVQMR 360 Query: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMP 420 V KNKGLILCFVGPPGVGKTSLAQSIA+ATGRQYVR+SLGGVYDE+DIRGHRRTYIGSMP Sbjct: 361 VAKNKGLILCFVGPPGVGKTSLAQSIARATGRQYVRISLGGVYDESDIRGHRRTYIGSMP 420 Query: 421 GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDL 480 GRIIQSLK+AK+SNPLLLLDE+DKMGSDLRGDPSAALLEVLDPAQNS+FVDHYLEVEYDL Sbjct: 421 GRIIQSLKKAKKSNPLLLLDEVDKMGSDLRGDPSAALLEVLDPAQNSTFVDHYLEVEYDL 480 Query: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCI 540 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHL+KKVL E+AL+ EE + Sbjct: 481 SDVMFIMTANTLNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLLKKVLRENALRAEEFSV 540 Query: 541 SDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPRY 600 +D VLLDIIR FT EAGVR+ ER+LMK+ARKAVTKIVK S+ VS+NE+NLQDYLG+PRY Sbjct: 541 NDAVLLDIIRSFTREAGVRNLERSLMKLARKAVTKIVKGSEQMVSVNEDNLQDYLGIPRY 600 Query: 601 KYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMPGKGEITITGNLKEIMKESILAASSY 660 +YGK+EGE+QVGIVTGLAWTEVGGEILTVEGVIMPGKG+ITITGNLKEIMKESILAASSY Sbjct: 601 QYGKMEGENQVGIVTGLAWTEVGGEILTVEGVIMPGKGKITITGNLKEIMKESILAASSY 660 Query: 661 VRSKATTFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMT 720 VRS+A TFGI PSAFN+ NIHVHVPE ATPKDGPSAGIAMATA+VS+MT IPVYKNVAMT Sbjct: 661 VRSRAMTFGISPSAFNDTNIHVHVPEAATPKDGPSAGIAMATAVVSVMTSIPVYKNVAMT 720 Query: 721 GELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780 GELTLRGR+LPIGGLKEKLLAALRAG+TKVLIPEEN+KDLM++PEN+KN LEIIPVSFM Sbjct: 721 GELTLRGRILPIGGLKEKLLAALRAGITKVLIPEENVKDLMEMPENIKNRLEIIPVSFME 780 Query: 781 EVLKHALLRMPDPLESEGNKSIPLSVEGIVVGKDGRSVAH 820 EVL+HALLRMPDP+ESE +PLSVE V+GK +++AH Sbjct: 781 EVLRHALLRMPDPIESEDINPLPLSVEEDVMGKSEQTIAH 820 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86357226|ref|YP_469118.1| ATP-dependent protease LA protein [Rhizobium etli CFN 42] Length = 805 | Back alignment and organism information |
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>gi|209548852|ref|YP_002280769.1| ATP-dependent protease La [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 805 | Back alignment and organism information |
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>gi|222148266|ref|YP_002549223.1| ATP-dependent protease La [Agrobacterium vitis S4] Length = 867 | Back alignment and organism information |
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>gi|190891274|ref|YP_001977816.1| ATP-dependent protease La protein [Rhizobium etli CIAT 652] Length = 805 | Back alignment and organism information |
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>gi|241204075|ref|YP_002975171.1| ATP-dependent protease La [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 805 | Back alignment and organism information |
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>gi|116251456|ref|YP_767294.1| ATP-dependent protease [Rhizobium leguminosarum bv. viciae 3841] Length = 805 | Back alignment and organism information |
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>gi|325292628|ref|YP_004278492.1| ATP-dependent protease La [Agrobacterium sp. H13-3] Length = 805 | Back alignment and organism information |
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>gi|15888590|ref|NP_354271.1| ATP-dependent protease LA [Agrobacterium tumefaciens str. C58] Length = 805 | Back alignment and organism information |
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>gi|222085566|ref|YP_002544096.1| ATP-dependent protease LA protein [Agrobacterium radiobacter K84] Length = 806 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 820 | ATP-dependent protease La [Candidatus Liberibacter asia | ||
KOG2004 | 906 | KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent | 0.0 | |
TIGR00763 | 775 | TIGR00763, lon, ATP-dependent protease La | 0.0 | |
PRK10787 | 784 | PRK10787, PRK10787, DNA-binding ATP-dependent protease | 0.0 | |
COG0466 | 782 | COG0466, Lon, ATP-dependent Lon protease, bacterial typ | 0.0 | |
pfam05362 | 205 | pfam05362, Lon_C, Lon protease (S16) C-terminal proteol | 9e-98 | |
PRK13765 | 637 | PRK13765, PRK13765, ATP-dependent protease Lon; Provisi | 2e-32 | |
TIGR00764 | 608 | TIGR00764, lon_rel, lon-related putative ATP-dependent | 3e-29 | |
TIGR02903 | 615 | TIGR02903, spore_lon_C, ATP-dependent protease, Lon fam | 7e-24 | |
COG1067 | 647 | COG1067, LonB, Predicted ATP-dependent protease [Posttr | 7e-23 | |
TIGR02653 | 675 | TIGR02653, Lon_rel_chp, conserved hypothetical protein | 2e-12 | |
pfam02190 | 193 | pfam02190, LON, ATP-dependent protease La (LON) domain | 1e-39 | |
COG2802 | 221 | COG2802, COG2802, Uncharacterized protein, similar to t | 5e-13 | |
TIGR02902 | 531 | TIGR02902, spore_lonB, ATP-dependent protease LonB | 3e-26 | |
pfam00004 | 131 | pfam00004, AAA, ATPase family associated with various c | 1e-20 | |
cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a wide | 4e-13 | |
pfam07728 | 139 | pfam07728, AAA_5, AAA domain (dynein-related subfamily) | 1e-08 | |
TIGR02639 | 731 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding | 5e-07 | |
smart00382 | 148 | smart00382, AAA, ATPases associated with a variety of c | 9e-07 | |
pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 3e-05 | |
COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebrand fac | 1e-04 | |
cd00267 | 157 | cd00267, ABC_ATPase, ABC (ATP-binding cassette) transpo | 3e-04 | |
KOG1808 | 1856 | KOG1808, KOG1808, KOG1808, AAA ATPase containing von Wi | 5e-04 | |
COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, helicase | 7e-04 | |
PRK11034 | 758 | PRK11034, clpA, ATP-dependent Clp protease ATP-binding | 0.004 | |
COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General function p | 2e-11 | |
KOG2170 | 344 | KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfami | 2e-05 | |
COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [ | 3e-05 | |
COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttranslat | 1e-09 | |
COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regulatory | 1e-04 | |
KOG0731 | 774 | KOG0731, KOG0731, KOG0731, AAA+-type ATPase containing | 2e-04 | |
COG1750 | 579 | COG1750, COG1750, Archaeal serine proteases [General fu | 6e-09 | |
PRK11823 | 446 | PRK11823, PRK11823, DNA repair protein RadA; Provisiona | 9e-09 | |
COG3480 | 342 | COG3480, SdrC, Predicted secreted protein containing a | 6e-07 | |
COG1066 | 456 | COG1066, Sms, Predicted ATP-dependent serine protease [ | 6e-07 | |
TIGR00416 | 454 | TIGR00416, sms, DNA repair protein RadA | 1e-04 | |
PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein RarA; | 1e-08 | |
PRK04195 | 482 | PRK04195, PRK04195, replication factor C large subunit; | 9e-05 | |
COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subunit o | 1e-04 | |
KOG0734 | 752 | KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing | 1e-04 | |
pfam01695 | 178 | pfam01695, IstB, IstB-like ATP binding protein | 4e-04 | |
PRK13341 | 725 | PRK13341, PRK13341, recombination factor protein RarA/u | 5e-04 | |
TIGR02880 | 284 | TIGR02880, cbbX_cfxQ, probable Rubsico expression prote | 0.001 | |
KOG0726 | 440 | KOG0726, KOG0726, KOG0726, 26S proteasome regulatory co | 0.004 | |
TIGR03345 | 852 | TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 fa | 2e-06 | |
KOG1051 | 898 | KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related | 1e-05 | |
TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | 2e-05 | |
PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | 2e-04 | |
COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttranslat | 0.004 | |
COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone activ | 3e-05 | |
COG0542 | 786 | COG0542, ClpA, ATPases with chaperone activity, ATP-bin | 3e-05 | |
smart00464 | 92 | smart00464, LON, Found in ATP-dependent protease La (LO | 3e-05 | |
KOG4658 | 889 | KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal tra | 2e-04 | |
smart00763 | 361 | smart00763, AAA_PrkA, PrkA AAA domain | 0.001 | |
pfam08298 | 358 | pfam08298, AAA_PrkA, PrkA AAA domain | 0.004 | |
PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisional | 0.003 |
>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La | Back alignment and domain information |
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>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
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>gnl|CDD|30814 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|114104 pfam05362, Lon_C, Lon protease (S16) C-terminal proteolytic domain | Back alignment and domain information |
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>gnl|CDD|184312 PRK13765, PRK13765, ATP-dependent protease Lon; Provisional | Back alignment and domain information |
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>gnl|CDD|162029 TIGR00764, lon_rel, lon-related putative ATP-dependent protease | Back alignment and domain information |
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>gnl|CDD|163066 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family | Back alignment and domain information |
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>gnl|CDD|31266 COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|131701 TIGR02653, Lon_rel_chp, conserved hypothetical protein | Back alignment and domain information |
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>gnl|CDD|145377 pfam02190, LON, ATP-dependent protease La (LON) domain | Back alignment and domain information |
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>gnl|CDD|32634 COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB | Back alignment and domain information |
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>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
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>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
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>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
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>gnl|CDD|162958 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
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>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
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>gnl|CDD|116338 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
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>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
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>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
---|
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>gnl|CDD|182917 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
---|
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
---|
>gnl|CDD|37381 KOG2170, KOG2170, KOG2170, ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
---|
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
---|
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|31415 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|35950 KOG0731, KOG0731, KOG0731, AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|31936 COG1750, COG1750, Archaeal serine proteases [General function prediction only] | Back alignment and domain information |
---|
>gnl|CDD|183326 PRK11823, PRK11823, DNA repair protein RadA; Provisional | Back alignment and domain information |
---|
>gnl|CDD|33283 COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] | Back alignment and domain information |
---|
>gnl|CDD|31265 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|161868 TIGR00416, sms, DNA repair protein RadA | Back alignment and domain information |
---|
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|179778 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
---|
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
>gnl|CDD|35953 KOG0734, KOG0734, KOG0734, AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein | Back alignment and domain information |
---|
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX | Back alignment and domain information |
---|
>gnl|CDD|35945 KOG0726, KOG0726, KOG0726, 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|163222 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
---|
>gnl|CDD|36269 KOG1051, KOG1051, KOG1051, Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
---|
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|30888 COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>gnl|CDD|128740 smart00464, LON, Found in ATP-dependent protease La (LON) | Back alignment and domain information |
---|
>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
---|
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain | Back alignment and domain information |
---|
>gnl|CDD|116881 pfam08298, AAA_PrkA, PrkA AAA domain | Back alignment and domain information |
---|
>gnl|CDD|177379 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 820 | ATP-dependent protease La [Candidatus Liberibacter asia | ||
TIGR00763 | 941 | lon ATP-dependent protease La; InterPro: IPR004815 Prot | 100.0 | |
PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 100.0 | |
COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Posttra | 100.0 | |
KOG2004 | 906 | consensus | 100.0 | |
pfam05362 | 205 | Lon_C Lon protease (S16) C-terminal proteolytic domain. | 100.0 | |
TIGR02653 | 677 | Lon_rel_chp conserved hypothetical protein; InterPro: I | 99.64 | |
COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Posttransl | 99.45 | |
COG4930 | 683 | Predicted ATP-dependent Lon-type protease [Posttranslat | 99.23 | |
TIGR02903 | 616 | spore_lon_C ATP-dependent protease, Lon family; InterPr | 100.0 | |
TIGR02902 | 532 | spore_lonB ATP-dependent protease LonB; InterPro: IPR01 | 100.0 | |
PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 100.0 | |
COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttranslationa | 100.0 | |
TIGR00764 | 662 | lon_rel ATP-dependent protease, putative; InterPro: IPR | 99.93 | |
pfam02190 | 193 | LON ATP-dependent protease La (LON) domain. | 99.98 | |
COG2802 | 221 | Uncharacterized protein, similar to the N-terminal doma | 99.95 | |
KOG4159 | 398 | consensus | 99.12 | |
smart00464 | 92 | LON Found in ATP-dependent protease La (LON). N-termina | 98.76 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 99.9 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.88 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 99.82 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 99.78 | |
PRK04195 | 403 | replication factor C large subunit; Provisional | 99.64 | |
PRK05201 | 442 | hslU ATP-dependent protease ATP-binding subunit; Provis | 99.63 | |
PRK05342 | 411 | clpX ATP-dependent protease ATP-binding subunit ClpX; P | 99.62 | |
PRK00440 | 318 | rfc replication factor C small subunit; Reviewed | 99.56 | |
CHL00181 | 287 | cbbX CbbX; Provisional | 99.54 | |
TIGR00382 | 452 | clpX ATP-dependent Clp protease, ATP-binding subunit Cl | 99.49 | |
COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General function p | 99.43 | |
COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [Posttr | 99.25 | |
KOG0991 | 333 | consensus | 98.54 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 99.88 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 99.82 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 99.68 | |
TIGR02915 | 451 | PEP_resp_reg putative PEP-CTERM system response regulat | 97.78 | |
PRK11823 | 454 | DNA repair protein RadA; Provisional | 99.73 | |
TIGR00416 | 481 | sms DNA repair protein RadA; InterPro: IPR004504 RadA/S | 99.06 | |
CHL00195 | 491 | ycf46 Ycf46; Provisional | 99.72 | |
PRK03992 | 390 | proteasome-activating nucleotidase; Provisional | 99.72 | |
PRK13342 | 417 | recombination factor protein RarA; Reviewed | 99.67 | |
CHL00176 | 631 | ftsH cell division protein; Validated | 99.59 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 99.59 | |
pfam05496 | 234 | RuvB_N Holliday junction DNA helicase ruvB N-terminus. | 99.58 | |
PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.49 | |
PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.45 | |
PRK05563 | 541 | DNA polymerase III subunits gamma and tau; Validated | 99.41 | |
KOG0738 | 491 | consensus | 99.38 | |
PRK06647 | 560 | DNA polymerase III subunits gamma and tau; Validated | 99.37 | |
PRK06305 | 462 | DNA polymerase III subunits gamma and tau; Validated | 99.36 | |
PRK06674 | 563 | DNA polymerase III subunits gamma and tau; Validated | 99.36 | |
PRK05896 | 613 | DNA polymerase III subunits gamma and tau; Validated | 99.35 | |
KOG0730 | 693 | consensus | 99.32 | |
PRK08451 | 523 | DNA polymerase III subunits gamma and tau; Validated | 99.29 | |
PRK09862 | 506 | putative ATP-dependent protease; Provisional | 99.29 | |
PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validated | 99.28 | |
PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.28 | |
COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subunit [P | 99.24 | |
CHL00081 | 347 | chlI Mg-protoporyphyrin IX chelatase | 99.21 | |
KOG0733 | 802 | consensus | 99.15 | |
PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; Provis | 99.08 | |
PRK05022 | 510 | anaerobic nitric oxide reductase transcription regulato | 99.07 | |
COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA | 99.04 | |
KOG2028 | 554 | consensus | 99.04 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 99.0 | |
PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisional | 98.99 | |
TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 98.99 | |
PRK10365 | 441 | transcriptional regulatory protein ZraR; Provisional | 98.97 | |
TIGR02397 | 363 | dnaX_nterm DNA polymerase III, subunits gamma and tau; | 98.96 | |
KOG0737 | 386 | consensus | 98.95 | |
PRK11388 | 639 | DNA-binding transcriptional regulator DhaR; Provisional | 98.93 | |
KOG0740 | 428 | consensus | 98.88 | |
PTZ00112 | 650 | origin recognition complex 1 protein; Provisional | 98.87 | |
PRK09111 | 600 | DNA polymerase III subunits gamma and tau; Validated | 98.86 | |
PRK06893 | 229 | DNA replication initiation factor; Validated | 98.85 | |
PRK05648 | 705 | DNA polymerase III subunits gamma and tau; Reviewed | 98.79 | |
COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA replic | 98.79 | |
KOG0730 | 693 | consensus | 98.78 | |
PRK08903 | 227 | hypothetical protein; Validated | 98.77 | |
PRK05642 | 234 | DNA replication initiation factor; Validated | 98.73 | |
KOG0727 | 408 | consensus | 98.73 | |
TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 98.72 | |
KOG0478 | 804 | consensus | 98.71 | |
KOG0736 | 953 | consensus | 98.68 | |
COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | 98.67 | |
PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.67 | |
TIGR02881 | 261 | spore_V_K stage V sporulation protein K; InterPro: IPR0 | 98.65 | |
PRK08770 | 663 | DNA polymerase III subunits gamma and tau; Validated | 98.6 | |
PRK08727 | 233 | hypothetical protein; Validated | 98.53 | |
COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA-type | 98.51 | |
TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 98.4 | |
KOG0735 | 952 | consensus | 98.34 | |
PRK09087 | 226 | hypothetical protein; Validated | 98.22 | |
KOG2680 | 454 | consensus | 98.13 | |
COG1221 | 403 | PspF Transcriptional regulators containing an AAA-type | 98.08 | |
COG0593 | 408 | DnaA ATPase involved in DNA replication initiation [DNA | 98.05 | |
KOG1514 | 767 | consensus | 98.03 | |
KOG2227 | 529 | consensus | 97.94 | |
TIGR02640 | 265 | gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR0 | 97.85 | |
PRK05818 | 262 | DNA polymerase III subunit delta'; Validated | 97.31 | |
KOG0477 | 854 | consensus | 96.46 | |
COG4650 | 531 | RtcR Sigma54-dependent transcription regulator containi | 95.1 | |
COG4240 | 300 | Predicted kinase [General function prediction only] | 94.67 | |
COG1750 | 579 | Archaeal serine proteases [General function prediction | 99.68 | |
TIGR00368 | 505 | TIGR00368 Mg chelatase homolog; InterPro: IPR004482 Thi | 98.65 | |
PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.47 | |
COG0606 | 490 | Predicted ATPase with chaperone activity [Posttranslati | 97.92 | |
PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; Provis | 95.79 | |
pfam00004 | 131 | AAA ATPase family associated with various cellular acti | 99.67 | |
pfam07724 | 168 | AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry inc | 99.66 | |
pfam07728 | 139 | AAA_5 AAA domain (dynein-related subfamily). This Pfam | 99.52 | |
cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 99.43 | |
pfam07726 | 131 | AAA_3 ATPase family associated with various cellular ac | 99.38 | |
KOG0736 | 953 | consensus | 99.3 | |
PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subunit Mc | 98.91 | |
KOG0728 | 404 | consensus | 98.78 | |
PRK07132 | 303 | DNA polymerase III subunit delta'; Validated | 98.6 | |
pfam00158 | 168 | Sigma54_activat Sigma-54 interaction domain. | 98.58 | |
smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 98.58 | |
PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 98.57 | |
COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor type A | 98.56 | |
PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.41 | |
PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.33 | |
PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.22 | |
PRK06871 | 324 | DNA polymerase III subunit delta'; Validated | 98.13 | |
PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.1 | |
pfam03266 | 168 | DUF265 Protein of unknown function, DUF265. | 98.07 | |
TIGR00678 | 216 | holB DNA polymerase III, delta' subunit; InterPro: IPR0 | 97.9 | |
PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 97.9 | |
pfam03215 | 490 | Rad17 Rad17 cell cycle checkpoint protein. | 97.89 | |
PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 97.67 | |
pfam00931 | 285 | NB-ARC NB-ARC domain. | 97.43 | |
PRK13531 | 498 | regulatory ATPase RavA; Provisional | 97.41 | |
PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 97.37 | |
KOG1808 | 1856 | consensus | 97.25 | |
pfam00910 | 105 | RNA_helicase RNA helicase. This family includes RNA hel | 97.22 | |
PRK06526 | 254 | transposase; Provisional | 97.13 | |
COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacteria [ | 97.04 | |
PRK08181 | 269 | transposase; Validated | 97.01 | |
cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily conserv | 96.95 | |
pfam05729 | 165 | NACHT NACHT domain. This NTPase domain is found in apop | 96.85 | |
cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 96.56 | |
cd03114 | 148 | ArgK-like The function of this protein family is unkown | 96.48 | |
PRK00771 | 433 | signal recognition particle protein Srp54; Provisional | 96.38 | |
pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 96.18 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 95.72 | |
PRK10867 | 453 | signal recognition particle protein; Provisional | 94.79 | |
PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 99.6 | |
COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the Holl | 99.44 | |
KOG0745 | 564 | consensus | 99.25 | |
KOG0735 | 952 | consensus | 98.71 | |
PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 98.21 | |
PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 98.12 | |
PRK06620 | 214 | hypothetical protein; Validated | 97.82 | |
COG0714 | 329 | MoxR-like ATPases [General function prediction only] | 99.57 | |
KOG0731 | 774 | consensus | 99.47 | |
COG0470 | 325 | HolB ATPase involved in DNA replication [DNA replicatio | 99.1 | |
TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family; InterPro: IPR | 98.98 | |
PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.97 | |
COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational modi | 98.92 | |
KOG0744 | 423 | consensus | 98.78 | |
PRK07471 | 363 | DNA polymerase III subunit delta'; Validated | 98.73 | |
KOG0739 | 439 | consensus | 98.73 | |
smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.72 | |
TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 98.71 | |
KOG2170 | 344 | consensus | 98.65 | |
PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 98.62 | |
KOG0652 | 424 | consensus | 98.56 | |
PRK07940 | 395 | DNA polymerase III subunit delta'; Validated | 98.52 | |
COG0606 | 490 | Predicted ATPase with chaperone activity [Posttranslati | 98.5 | |
PTZ00111 | 916 | DNA replication licensing factor MCM4; Provisional | 98.43 | |
KOG0726 | 440 | consensus | 98.38 | |
TIGR02880 | 284 | cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in | 98.18 | |
pfam01078 | 207 | Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesi | 98.14 | |
KOG0742 | 630 | consensus | 98.06 | |
PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 97.94 | |
KOG0480 | 764 | consensus | 97.39 | |
KOG1970 | 634 | consensus | 97.33 | |
pfam01057 | 271 | Parvo_NS1 Parvovirus non-structural protein NS1. This f | 97.3 | |
PRK09183 | 258 | transposase/IS protein; Provisional | 97.15 | |
KOG0990 | 360 | consensus | 97.05 | |
KOG0482 | 721 | consensus | 96.87 | |
PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 96.53 | |
COG2766 | 649 | PrkA Putative Ser protein kinase [Signal transduction m | 95.88 | |
pfam05272 | 198 | VirE Virulence-associated protein E. This family contai | 95.6 | |
KOG0479 | 818 | consensus | 94.64 | |
PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.5 | |
PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.45 | |
COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subunit [D | 99.41 | |
PRK07270 | 557 | DNA polymerase III subunits gamma and tau; Validated | 99.38 | |
PRK07133 | 718 | DNA polymerase III subunits gamma and tau; Validated | 99.28 | |
KOG0733 | 802 | consensus | 99.27 | |
TIGR00635 | 305 | ruvB Holliday junction DNA helicase RuvB; InterPro: IPR | 99.19 | |
KOG0989 | 346 | consensus | 99.06 | |
PRK10820 | 513 | DNA-binding transcriptional regulator TyrR; Provisional | 99.05 | |
KOG0651 | 388 | consensus | 99.05 | |
pfam00493 | 327 | MCM MCM2/3/5 family. | 99.04 | |
PRK07764 | 775 | DNA polymerase III subunits gamma and tau; Validated | 99.02 | |
PRK11608 | 325 | pspF phage shock protein operon transcriptional activat | 98.99 | |
PRK08853 | 717 | DNA polymerase III subunits gamma and tau; Validated | 98.94 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 98.94 | |
PRK09112 | 352 | DNA polymerase III subunit delta'; Validated | 98.89 | |
PRK08691 | 704 | DNA polymerase III subunits gamma and tau; Validated | 98.88 | |
PRK07003 | 816 | DNA polymerase III subunits gamma and tau; Validated | 98.84 | |
PRK07994 | 643 | DNA polymerase III subunits gamma and tau; Validated | 98.83 | |
PRK06872 | 696 | DNA polymerase III subunits gamma and tau; Provisional | 98.75 | |
PRK12323 | 721 | DNA polymerase III subunits gamma and tau; Provisional | 98.7 | |
COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein [Tran | 98.66 | |
COG2204 | 464 | AtoC Response regulator containing CheY-like receiver, | 98.62 | |
COG1241 | 682 | MCM2 Predicted ATPase involved in replication control, | 98.59 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 98.56 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 98.39 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.39 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 98.36 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 98.24 | |
COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA-type | 98.22 | |
KOG0741 | 744 | consensus | 98.21 | |
COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 98.15 | |
pfam01637 | 223 | Arch_ATPase Archaeal ATPase. This family contain a cons | 98.1 | |
pfam05673 | 248 | DUF815 Protein of unknown function (DUF815). This famil | 97.9 | |
PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.89 | |
TIGR02442 | 688 | Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR0 | 97.87 | |
KOG1968 | 871 | consensus | 97.68 | |
KOG2035 | 351 | consensus | 97.3 | |
COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General function p | 96.05 | |
COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase subun | 99.26 | |
TIGR00390 | 463 | hslU heat shock protein HslVU, ATPase subunit HslU; Int | 97.53 | |
KOG1051 | 898 | consensus | 99.24 | |
TIGR02858 | 282 | spore_III_AA stage III sporulation protein AA; InterPro | 97.39 | |
COG2425 | 437 | Uncharacterized protein containing a von Willebrand fac | 94.47 | |
TIGR01241 | 505 | FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: | 99.17 | |
KOG0734 | 752 | consensus | 99.11 | |
TIGR01817 | 574 | nifA Nif-specific regulatory protein; InterPro: IPR0101 | 98.16 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 98.02 | |
COG3480 | 342 | SdrC Predicted secreted protein containing a PDZ domain | 99.02 | |
KOG0743 | 457 | consensus | 98.95 | |
PHA02244 | 383 | ATPase-like protein | 98.66 | |
KOG1969 | 877 | consensus | 98.53 | |
pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 98.49 | |
COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino acids | 97.57 | |
COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor type A | 96.72 | |
COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol meta | 96.63 | |
COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport and m | 95.77 | |
smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 98.67 | |
pfam06309 | 127 | Torsin Torsin. This family consists of several eukaryot | 97.75 | |
pfam08298 | 358 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 97.58 | |
PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.51 | |
PRK13946 | 195 | shikimate kinase; Provisional | 97.47 | |
PRK09270 | 230 | frcK putative fructose transport system kinase; Reviewe | 97.19 | |
PRK06696 | 227 | uridine kinase; Validated | 97.03 | |
KOG4658 | 889 | consensus | 96.83 | |
PRK07263 | 453 | consensus | 96.34 | |
COG2074 | 299 | 2-phosphoglycerate kinase [Carbohydrate transport and m | 96.24 | |
PRK05636 | 507 | replicative DNA helicase; Provisional | 96.03 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 95.93 | |
PRK05595 | 444 | replicative DNA helicase; Provisional | 95.75 | |
PRK12727 | 557 | flagellar biosynthesis regulator FlhF; Provisional | 95.74 | |
PRK04328 | 250 | hypothetical protein; Provisional | 95.71 | |
PRK05291 | 445 | trmE tRNA modification GTPase TrmE; Reviewed | 95.7 | |
PRK07667 | 190 | uridine kinase; Provisional | 95.65 | |
pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 95.62 | |
PRK06904 | 472 | replicative DNA helicase; Validated | 95.53 | |
COG3842 | 352 | PotA ABC-type spermidine/putrescine transport systems, | 95.52 | |
PRK11860 | 662 | bifunctional 3-phosphoshikimate 1-carboxyvinyltransfera | 95.49 | |
PRK05541 | 176 | adenylylsulfate kinase; Provisional | 95.43 | |
pfam00006 | 213 | ATP-synt_ab ATP synthase alpha/beta family, nucleotide- | 95.37 | |
PRK13764 | 605 | ATPase; Provisional | 95.33 | |
cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all sequ | 95.3 | |
PRK07004 | 460 | replicative DNA helicase; Provisional | 95.25 | |
TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family, HK0 | 95.05 | |
TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-binding pro | 95.04 | |
PRK08082 | 453 | consensus | 95.02 | |
cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexameric h | 95.01 | |
pfam00519 | 432 | PPV_E1_C Papillomavirus helicase. This protein is a DNA | 94.99 | |
PRK08006 | 471 | replicative DNA helicase; Provisional | 94.95 | |
cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTPase t | 94.89 | |
PRK05748 | 448 | replicative DNA helicase; Provisional | 94.73 | |
PRK03846 | 198 | adenylylsulfate kinase; Provisional | 94.73 | |
PRK09165 | 484 | replicative DNA helicase; Provisional | 94.72 | |
cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'-3' he | 94.69 | |
pfam03796 | 186 | DnaB_C DnaB-like helicase C terminal domain. The hexame | 94.51 | |
PRK06067 | 241 | flagellar accessory protein FlaH; Validated | 94.22 | |
cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family | 94.22 | |
PRK10744 | 257 | phosphate transporter subunit; Provisional | 94.21 | |
PRK04132 | 863 | replication factor C small subunit; Provisional | 98.27 | |
KOG0732 | 1080 | consensus | 98.21 | |
PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.16 | |
KOG0729 | 435 | consensus | 98.07 | |
TIGR02173 | 173 | cyt_kin_arch cytidylate kinase, putative; InterPro: IPR | 98.07 | |
PRK08116 | 262 | hypothetical protein; Validated | 98.06 | |
COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 97.97 | |
PRK13695 | 174 | putative NTPase; Provisional | 97.95 | |
PRK07952 | 242 | DNA replication protein DnaC; Validated | 97.91 | |
PRK06995 | 404 | flhF flagellar biosynthesis regulator FlhF; Validated | 97.71 | |
COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 97.57 | |
pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 97.56 | |
TIGR00390 | 463 | hslU heat shock protein HslVU, ATPase subunit HslU; Int | 97.52 | |
PRK12377 | 248 | putative replication protein; Provisional | 97.35 | |
PRK06835 | 330 | DNA replication protein DnaC; Validated | 97.34 | |
KOG0741 | 744 | consensus | 97.33 | |
PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.1 | |
PRK06921 | 265 | hypothetical protein; Provisional | 96.97 | |
cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversible pho | 96.78 | |
PRK02496 | 185 | adk adenylate kinase; Provisional | 96.66 | |
cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain I of | 96.5 | |
COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleotide tr | 96.44 | |
COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 96.42 | |
cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 96.26 | |
COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and metabol | 96.21 | |
cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems involved i | 96.12 | |
PTZ00088 | 225 | adenylate kinase 1; Provisional | 96.09 | |
cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway component | 96.06 | |
pfam00437 | 283 | GSPII_E Type II/IV secretion system protein. This famil | 95.89 | |
PRK00279 | 215 | adk adenylate kinase; Reviewed | 95.83 | |
pfam00406 | 186 | ADK Adenylate kinase. | 95.63 | |
pfam01745 | 232 | IPT Isopentenyl transferase. Isopentenyl transferase / | 95.59 | |
PRK13808 | 297 | adenylate kinase; Provisional | 95.42 | |
COG0802 | 149 | Predicted ATPase or kinase [General function prediction | 95.33 | |
KOG2485 | 335 | consensus | 95.31 | |
TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members | 95.28 | |
TIGR01351 | 232 | adk adenylate kinases; InterPro: IPR006259 Most members | 95.22 | |
smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 95.14 | |
cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor ( | 94.92 | |
TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protein Ylq | 94.8 | |
KOG3079 | 195 | consensus | 94.73 | |
PRK09563 | 282 | rbgA ribosomal biogenesis GTPase; Reviewed | 94.42 | |
cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway is th | 94.29 | |
TIGR00602 | 670 | rad24 checkpoint protein rad24; InterPro: IPR004582 To | 98.14 | |
PRK08154 | 304 | anaerobic benzoate catabolism transcriptional regulator | 97.85 | |
PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.57 | |
COG1855 | 604 | ATPase (PilT family) [General function prediction only] | 95.73 | |
TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.77 | |
PRK04220 | 306 | 2-phosphoglycerate kinase; Provisional | 96.45 | |
PRK05703 | 412 | flhF flagellar biosynthesis regulator FlhF; Validated | 97.72 | |
KOG1051 | 898 | consensus | 96.78 | |
PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.57 | |
PRK13948 | 182 | shikimate kinase; Provisional | 97.52 | |
PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 97.52 | |
PRK13947 | 171 | shikimate kinase; Provisional | 97.51 | |
cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in the shi | 97.46 | |
COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and metabol | 97.45 | |
PRK03731 | 172 | aroL shikimate kinase II; Reviewed | 97.39 | |
PRK13949 | 169 | shikimate kinase; Provisional | 97.38 | |
PRK00625 | 173 | shikimate kinase; Provisional | 97.34 | |
PRK03839 | 180 | putative kinase; Provisional | 97.11 | |
PRK13951 | 488 | bifunctional shikimate kinase/3-dehydroquinate synthase | 97.02 | |
cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyzes the | 96.96 | |
COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AMP kin | 96.9 | |
KOG3347 | 176 | consensus | 96.81 | |
pfam02367 | 123 | UPF0079 Uncharacterized P-loop hydrolase UPF0079. This | 96.55 | |
PRK00300 | 208 | gmk guanylate kinase; Provisional | 96.52 | |
PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 96.51 | |
cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 96.49 | |
TIGR00368 | 505 | TIGR00368 Mg chelatase homolog; InterPro: IPR004482 Thi | 96.44 | |
TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this family are | 96.3 | |
PRK07261 | 171 | topology modulation protein; Provisional | 96.28 | |
cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-i | 96.2 | |
PRK04040 | 189 | adenylate kinase; Provisional | 96.18 | |
PRK08118 | 167 | topology modulation protein; Reviewed | 96.18 | |
PRK10646 | 153 | putative ATPase; Provisional | 96.11 | |
PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 96.11 | |
PRK00023 | 225 | cmk cytidylate kinase; Provisional | 96.06 | |
cd02030 | 219 | NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) i | 96.05 | |
COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transport sys | 95.98 | |
cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phosphory | 95.98 | |
cd03115 | 173 | SRP The signal recognition particle (SRP) mediates the | 95.97 | |
PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 95.94 | |
PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 95.94 | |
pfam00448 | 196 | SRP54 SRP54-type protein, GTPase domain. This family in | 95.91 | |
PRK04182 | 178 | cytidylate kinase; Provisional | 95.9 | |
PRK11545 | 177 | gntK gluconate kinase 1; Provisional | 95.87 | |
PRK13477 | 512 | bifunctional pantoate ligase/cytidylate kinase; Provisi | 95.86 | |
COG0410 | 237 | LivF ABC-type branched-chain amino acid transport syste | 95.83 | |
pfam00625 | 182 | Guanylate_kin Guanylate kinase. | 95.74 | |
pfam07931 | 174 | CPT Chloramphenicol phosphotransferase-like protein. Th | 95.73 | |
cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phosphoryl t | 95.71 | |
cd01394 | 218 | radB RadB. The archaeal protein radB shares similarity | 95.67 | |
cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ07 | 95.65 | |
cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), | 95.6 | |
cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the glycine | 95.6 | |
PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Provision | 95.51 | |
PRK10851 | 352 | sulfate/thiosulfate transporter subunit; Provisional | 95.51 | |
TIGR03575 | 340 | selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Me | 95.5 | |
TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transport sy | 95.49 | |
cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 95.49 | |
PRK10418 | 254 | nikD nickel transporter ATP-binding protein; Provisiona | 95.49 | |
PRK00091 | 304 | miaA tRNA delta(2)-isopentenylpyrophosphate transferase | 95.47 | |
PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 95.44 | |
cd03299 | 235 | ABC_ModC_like Archeal protein closely related to ModC. | 95.43 | |
cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding component | 95.43 | |
cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), | 95.38 | |
cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-associate | 95.35 | |
PRK11650 | 358 | ugpC glycerol-3-phosphate transporter ATP-binding subun | 95.34 | |
cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_like) | 95.33 | |
PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 95.28 | |
PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Provisio | 95.25 | |
PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provisiona | 95.23 | |
PRK01184 | 183 | hypothetical protein; Provisional | 95.22 | |
pfam01202 | 158 | SKI Shikimate kinase. | 95.22 | |
PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding protein; P | 95.19 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 95.16 | |
PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; Prov | 95.14 | |
PRK10771 | 233 | thiQ thiamine transporter ATP-binding subunit; Provisio | 95.1 | |
TIGR02237 | 223 | recomb_radB DNA repair and recombination protein RadB; | 95.08 | |
cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor | 95.07 | |
PRK05480 | 209 | uridine kinase; Provisional | 95.03 | |
PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; Prov | 95.03 | |
cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter that i | 95.03 | |
PRK13768 | 253 | GTPase; Provisional | 95.02 | |
PRK11701 | 258 | phnK phosphonates transport ATP-binding protein; Provis | 95.01 | |
cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-type tra | 95.0 | |
TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, ATP- | 94.99 | |
PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter subunit | 94.99 | |
cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recomb | 94.98 | |
cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleotide e | 94.97 | |
cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 94.97 | |
pfam00485 | 196 | PRK Phosphoribulokinase / Uridine kinase family. In Ara | 94.96 | |
PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subunit; Pr | 94.96 | |
PRK10895 | 241 | putative ABC transporter ATP-binding protein YhbG; Prov | 94.94 | |
PRK13539 | 206 | cytochrome c biogenesis protein CcmA; Provisional | 94.93 | |
cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of the L | 94.91 | |
PRK11264 | 248 | putative amino-acid ABC transporter ATP-binding protein | 94.9 | |
cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding com | 94.89 | |
PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; Prov | 94.87 | |
PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; Provi | 94.85 | |
PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Provisi | 94.84 | |
PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.82 | |
TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding prote | 94.81 | |
PRK10419 | 266 | nikE nickel transporter ATP-binding protein; Provisiona | 94.79 | |
cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin exporte | 94.79 | |
COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signal tra | 94.78 | |
COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility and s | 94.77 | |
cd03234 | 226 | ABCG_White The White subfamily represents ABC transport | 94.77 | |
PRK13548 | 257 | hmuV hemin importer ATP-binding subunit; Provisional | 94.76 | |
cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the maltose | 94.74 | |
PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Reviewed | 94.73 | |
cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-type tr | 94.72 | |
COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and metaboli | 94.72 | |
PRK10261 | 623 | glutathione transporter ATP-binding protein; Provisiona | 94.72 | |
PRK13542 | 224 | consensus | 94.71 | |
PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.69 | |
TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC transpor | 94.69 | |
CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 94.68 | |
PRK10789 | 569 | putative multidrug transporter membrane\ATP-binding com | 94.67 | |
cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Binding | 94.67 | |
pfam03029 | 234 | ATP_bind_1 Conserved hypothetical ATP binding protein. | 94.65 | |
PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 94.65 | |
cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter subfamil | 94.63 | |
PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; Prov | 94.62 | |
pfam01583 | 157 | APS_kinase Adenylylsulphate kinase. Enzyme that catalys | 94.58 | |
PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.56 | |
PRK09452 | 378 | potA putrescine/spermidine ABC transporter ATPase prote | 94.56 | |
PRK09536 | 409 | btuD corrinoid ABC transporter ATPase; Reviewed | 94.56 | |
cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC component | 94.55 | |
cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) tr | 94.55 | |
cd01673 | 193 | dNK Deoxyribonucleoside kinase (dNK) catalyzes the phos | 94.54 | |
cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the YhbG fam | 94.53 | |
PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.51 | |
cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibr | 94.51 | |
cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC component o | 94.5 | |
PRK13544 | 208 | consensus | 94.48 | |
cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibr | 94.46 | |
cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 94.45 | |
cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transporter c | 94.4 | |
cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in drug | 94.37 | |
cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type tr | 94.37 | |
cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-like (P | 94.32 | |
COG1428 | 216 | Deoxynucleoside kinases [Nucleotide transport and metab | 94.31 | |
PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; Prov | 94.29 | |
cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in cyto | 94.28 | |
TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding prote | 94.25 | |
PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; Provi | 94.24 | |
cd01393 | 226 | recA_like RecA is a bacterial enzyme which has roles in | 94.23 | |
cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a | 94.23 | |
cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tranpor | 94.23 | |
cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNa | 94.23 | |
PRK11147 | 632 | ABC transporter ATPase component; Reviewed | 94.23 | |
PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.22 | |
cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonate tra | 94.19 | |
cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-binding p | 94.16 | |
PRK13634 | 276 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.14 | |
cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute Trans | 94.13 | |
PRK13547 | 273 | hmuV hemin importer ATP-binding subunit; Provisional | 94.12 | |
cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II of t | 94.12 | |
COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General function p | 97.44 | |
KOG1400 | 371 | consensus | 96.99 | |
PRK10416 | 499 | cell division protein FtsY; Provisional | 96.84 | |
COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracellular | 96.64 | |
pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 96.15 | |
TIGR00064 | 284 | ftsY signal recognition particle-docking protein FtsY; | 94.38 | |
pfam07693 | 301 | KAP_NTPase KAP family P-loop domain. The KAP (after Kid | 96.61 | |
KOG1942 | 456 | consensus | 96.45 | |
pfam01768 | 264 | Birna_VP4 Birnavirus VP4 protein. VP4 is a viral protea | 96.44 | |
COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome biog | 95.95 | |
KOG0964 | 1200 | consensus | 94.54 | |
PRK06762 | 166 | hypothetical protein; Provisional | 95.24 | |
cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS prot | 94.12 | |
PRK04132 | 863 | replication factor C small subunit; Provisional | 94.94 | |
PRK12337 | 492 | 2-phosphoglycerate kinase; Provisional | 94.74 | |
TIGR01448 | 769 | recD_rel helicase, RecD/TraA family; InterPro: IPR00634 | 94.67 | |
KOG1803 | 649 | consensus | 94.64 | |
PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 94.38 |
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes | Back alignment and domain information |
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