HHsearch alignment for GI: 254780270 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.82  E-value=1.5e-16  Score=144.12  Aligned_cols=260  Identities=21%  Similarity=0.347  Sum_probs=200.8

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-CCCCCCC--EEEEECCCCCCHHHHH
Q ss_conf             9999876540415876632210-6889987766520116899999999999984-2444673--5998605656502799
Q gi|254780270|r  308 VRNYLDWLLGVPWDKKSKTKKN-LDFAIRILDQDHFGLEKVKERIIEYLAVQMR-VIKNKGL--ILCFVGPPGVGKTSLA  383 (820)
Q Consensus       308 ~r~Yld~~~~lPW~~~t~~~~d-l~~a~~iLd~~hyGl~~vK~rile~lav~~~-~~~~~g~--il~l~gppgvGKts~~  383 (820)
T Consensus       477 I~~vvs~~tgiPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElA  556 (823)
T CHL00095        477 IAEIVSAWTGIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELT  556 (823)
T ss_pred             HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf             99999998689847633458899987888787784076999999999999997089989997468998789988779999


Q ss_pred             HHHHHHH---CCCEEEEECCCCCC---HHHHCCCCCCCCCCCC-HHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHH
Q ss_conf             9999770---88249986188888---8883563200145671-289999983278873999933155423117711556
Q gi|254780270|r  384 QSIAKAT---GRQYVRMSLGGVYD---EADIRGHRRTYIGSMP-GRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA  456 (820)
Q Consensus       384 ~sia~al---~r~f~~islgg~~d---~~~i~gh~~ty~ga~p-g~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~a  456 (820)
T Consensus       557 K~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~--PysVvLfDEIEKA----HpdV~ni  630 (823)
T CHL00095        557 KALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK--PYTVVLFDEIEKA----HPDIFNL  630 (823)
T ss_pred             HHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC--CCEEEEECHHHHC----CHHHHHH
T ss_conf             999999747820258853510155420767458998766778788201988719--9869986213113----8899998


Q ss_pred             HHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-C---------------------------------------CCH
Q ss_conf             655406001681332010352364427999934865-5---------------------------------------441
Q gi|254780270|r  457 LLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-N---------------------------------------IPL  496 (820)
Q Consensus       457 llevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~---------------------------------------i~~  496 (820)
T Consensus       631 lLQvlD---dG~LtD~~-Gr~vdF~NtIIImTSNlGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~P  706 (823)
T CHL00095        631 LLQILD---DGRLTDSK-GRTIDFKNTLIIMTSNLGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRP  706 (823)
T ss_pred             HHHHCC---CCCCCCCC-CCEEECEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf             876516---88434899-99884310399971650558887413443433344543220235899999999999843798


Q ss_pred             HHCCCE-EEEEECCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-HH
Q ss_conf             311724-7998258786899989998608--98998625781313228999999973-1774102347888799998-98
Q gi|254780270|r  497 PLMDRM-EIIRIAGYTEEEKLQIAKNHLV--KKVLTEHALKQEECCISDGVLLDIIR-LFTHEAGVRSFERALMKIA-RK  571 (820)
Q Consensus       497 ~l~drm-e~i~~~~y~~~ek~~i~~~~l~--p~~~~~~~~~~~~~~~~~~~i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~  571 (820)
T Consensus       707 EFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i---~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~~~i~~~  783 (823)
T CHL00095        707 EFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGI---QLEVDERFKTLLAKEGYNPLYGARPLRRAIMRLLEDP  783 (823)
T ss_pred             HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             7873278278618999999999999999999999996898---5998889999999958797768136889999998899


Q ss_pred             HHHHHHCCC
Q ss_conf             765421178
Q gi|254780270|r  572 AVTKIVKNS  580 (820)
Q Consensus       572 ~~~~~~~~~  580 (820)
T Consensus       784 ls~~il~g~  792 (823)
T CHL00095        784 LAEEVLSFK  792 (823)
T ss_pred             HHHHHHCCC
T ss_conf             999997488