HHsearch alignment for GI: 254780270 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.39  E-value=9.5e-06  Score=62.34  Aligned_cols=174  Identities=25%  Similarity=0.411  Sum_probs=108.0

Q ss_pred             HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
Q ss_conf             20116899999999999984244467359986056565027999999770----------88249986188888888356
Q gi|254780270|r  341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRG  410 (820)
Q Consensus       341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~g  410 (820)
T Consensus       181 vIGRd~EI~r~i~IL~RR~KNN------piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGt----  250 (823)
T CHL00095        181 VIGRDKEIERVIQILGRRTKNN------PILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGT----  250 (823)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCC------CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCC----
T ss_conf             7595699999999997732488------502379998799999999997608899868759936884288775334----


Q ss_pred             CCCCCCCCCCHH---HHHHHHHCCCCCEEEEEECHHHH-HHHC-CC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf             320014567128---99999832788739999331554-2311-77--11556655406001681332010352364427
Q gi|254780270|r  411 HRRTYIGSMPGR---IIQSLKRAKRSNPLLLLDEIDKM-GSDL-RG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV  483 (820)
Q Consensus       411 h~~ty~ga~pg~---ii~~l~~~~~~npv~~ldeidk~-~~~~-~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v  483 (820)
T Consensus       251 ---kyRGeFEeRlk~il~ei~~~--~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLa---rGel------------~~  310 (823)
T CHL00095        251 ---KYRGEFEERIKKIMDEIKKA--NNIILVIDEIHTLIGAGAAEGAIDAANILKPALA---RGKL------------QC  310 (823)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHC--CCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHH---CCCC------------EE
T ss_conf             ---22267999999999999857--9869997351653288976664317887657864---8986------------69


Q ss_pred             EEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             99993486----55441311724799825878689998999860898998625781313228999999973
Q gi|254780270|r  484 MFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIR  550 (820)
Q Consensus       484 ~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~  550 (820)
T Consensus       311 IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~g-l~~~yE~~H~-----V~i~d~Ai~aav~  375 (823)
T CHL00095        311 IGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLG-LRDRYEKHHN-----LSISDKALEAAAK  375 (823)
T ss_pred             EEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHHHHHCC-----CCCCHHHHHHHHH
T ss_conf             970788999998530588996268410289987999999999-9999987508-----8504789999999