HHsearch alignment for GI: 254780270 and conserved domain: CHL00181

>CHL00181 cbbX CbbX; Provisional.
Probab=99.54  E-value=3.7e-12  Score=110.93  Aligned_cols=227  Identities=25%  Similarity=0.368  Sum_probs=146.8

Q ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----
Q ss_conf             21068899877665201168999999999999842---------4446735998605656502799999977088-----
Q gi|254780270|r  327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV---------IKNKGLILCFVGPPGVGKTSLAQSIAKATGR-----  392 (820)
Q Consensus       327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~---------~~~~g~il~l~gppgvGKts~~~sia~al~r-----  392 (820)
T Consensus        11 ~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~   90 (287)
T CHL00181         11 KTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK   90 (287)
T ss_pred             HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             53499999999886469699999999999999999999987999888765388878998679999999999999869955


Q ss_pred             --CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH-HCCC----CHHHHHHHHCCCCC
Q ss_conf             --2499861888888883563200145671289999983278873999933155423-1177----11556655406001
Q gi|254780270|r  393 --QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS-DLRG----DPSAALLEVLDPAQ  465 (820)
Q Consensus       393 --~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~-~~~g----dp~~allevldp~q  465 (820)
T Consensus        91 ~g~vve~------~r~dLvg---~yvG~Ta~kt~~~i~~--a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~  159 (287)
T CHL00181         91 KGHLITV------TRDDLVG---QYIGHTAPKTKEVLKK--AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR  159 (287)
T ss_pred             CCEEEEE------CHHHHCC---CCCCCCHHHHHHHHHH--CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             8958995------3588416---3535216999999996--459879982446535788999837999999999987079


Q ss_pred             CCCEEEEECCCCCCCCCEEEEE-ECCC-----CCCCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             6813320103523644279999-3486-----554413117247-99825878689998999860898998625781313
Q gi|254780270|r  466 NSSFVDHYLEVEYDLSDVMFIM-TANT-----LNIPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEEC  538 (820)
Q Consensus       466 n~~f~d~y~~~~~dls~v~fi~-tan~-----~~i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~  538 (820)
T Consensus       160 ---------------~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~----------~~  214 (287)
T CHL00181        160 ---------------DDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQ----------QY  214 (287)
T ss_pred             ---------------CCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHC----------CC
T ss_conf             ---------------98899984678999999985904787688723779859999999999999986----------98


Q ss_pred             CCCHHHHHHHHH---CCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf             228999999973---17741---023478887999989876542117852012796786
Q gi|254780270|r  539 CISDGVLLDIIR---LFTHE---AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNL  591 (820)
Q Consensus       539 ~~~~~~i~~ii~---~Yt~E---aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l  591 (820)
T Consensus       215 ~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~~~~~--~~~~~dL  271 (287)
T CHL00181        215 QLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFASGGK--VLTKADL  271 (287)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHH
T ss_conf             25879999999999985089998748999999999999999886567999--9999997