HHsearch alignment for GI: 254780270 and conserved domain: CHL00181
>CHL00181 cbbX CbbX; Provisional.
Probab=99.54 E-value=3.7e-12 Score=110.93 Aligned_cols=227 Identities=25% Similarity=0.368 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----
Q ss_conf 21068899877665201168999999999999842---------4446735998605656502799999977088-----
Q gi|254780270|r 327 KKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRV---------IKNKGLILCFVGPPGVGKTSLAQSIAKATGR----- 392 (820)
Q Consensus 327 ~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~---------~~~~g~il~l~gppgvGKts~~~sia~al~r----- 392 (820)
T Consensus 11 ~~~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~ 90 (287)
T CHL00181 11 KTQIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK 90 (287)
T ss_pred HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 53499999999886469699999999999999999999987999888765388878998679999999999999869955
Q ss_pred --CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH-HCCC----CHHHHHHHHCCCCC
Q ss_conf --2499861888888883563200145671289999983278873999933155423-1177----11556655406001
Q gi|254780270|r 393 --QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS-DLRG----DPSAALLEVLDPAQ 465 (820)
Q Consensus 393 --~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~-~~~g----dp~~allevldp~q 465 (820)
T Consensus 91 ~g~vve~------~r~dLvg---~yvG~Ta~kt~~~i~~--a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~ 159 (287)
T CHL00181 91 KGHLITV------TRDDLVG---QYIGHTAPKTKEVLKK--AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQR 159 (287)
T ss_pred CCEEEEE------CHHHHCC---CCCCCCHHHHHHHHHH--CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8958995------3588416---3535216999999996--459879982446535788999837999999999987079
Q ss_pred CCCEEEEECCCCCCCCCEEEEE-ECCC-----CCCCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6813320103523644279999-3486-----554413117247-99825878689998999860898998625781313
Q gi|254780270|r 466 NSSFVDHYLEVEYDLSDVMFIM-TANT-----LNIPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEEC 538 (820)
Q Consensus 466 n~~f~d~y~~~~~dls~v~fi~-tan~-----~~i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~ 538 (820)
T Consensus 160 ---------------~~lvvI~AGY~~eM~~fl~~NpGL~sRf~~~i~F~dYt~~EL~~I~~~~~~~~----------~~ 214 (287)
T CHL00181 160 ---------------DDLVVIFAGYKDRMDKFYESNPGLSSRVANHVDFPDYTPEELLQIAKMMLEEQ----------QY 214 (287)
T ss_pred ---------------CCEEEEEECCHHHHHHHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHC----------CC
T ss_conf ---------------98899984678999999985904787688723779859999999999999986----------98
Q ss_pred CCCHHHHHHHHH---CCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 228999999973---17741---023478887999989876542117852012796786
Q gi|254780270|r 539 CISDGVLLDIIR---LFTHE---AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNL 591 (820)
Q Consensus 539 ~~~~~~i~~ii~---~Yt~E---aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l 591 (820)
T Consensus 215 ~l~~~a~~~l~~~~~~~~~~~~FGNaR~vrnl~e~a~~~qa~Rl~~~~~~--~~~~~dL 271 (287)
T CHL00181 215 QLTPEAEKVLLDYIKRRMEQPLFANARSVRNAIDRARMRQANRIFASGGK--VLTKADL 271 (287)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHH
T ss_conf 25879999999999985089998748999999999999999886567999--9999997