HHsearch alignment for GI: 254780270 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=98.92 E-value=4.9e-08 Score=79.68 Aligned_cols=182 Identities=25% Similarity=0.341 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHHHHHCCC------CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 322106889987766-------520116899999999999984244------4673599860565650279999997708
Q gi|254780270|r 325 KTKKNLDFAIRILDQ-------DHFGLEKVKERIIEYLAVQMRVIK------NKGLILCFVGPPGVGKTSLAQSIAKATG 391 (820)
Q Consensus 325 ~~~~dl~~a~~iLd~-------~hyGl~~vK~rile~lav~~~~~~------~~g~il~l~gppgvGKts~~~sia~al~ 391 (820)
T Consensus 129 ~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 129 AFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred CCCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 66777588987413566767566418679999999999986385566752353456526855999872789999845468
Q ss_pred CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHCC-C-CHHHHHHHHCCCCCCCC
Q ss_conf 82499861888888883563200145671289999983278873-999933155423117-7-11556655406001681
Q gi|254780270|r 392 RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDLR-G-DPSAALLEVLDPAQNSS 468 (820)
Q Consensus 392 r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~~-g-dp~~allevldp~qn~~ 468 (820)
T Consensus 209 VPFf~iSG-----S~FV----emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTL-NQlLv 278 (596)
T COG0465 209 VPFFSISG-----SDFV----EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTL-NQLLV 278 (596)
T ss_pred CCCEECCC-----HHHH----HHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHH-HHHHH
T ss_conf 98353034-----4464----43147883888999998551599669876343314545778899806999999-88885
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 3320103523644279999348655-44131-----172479982587868999899986
Q gi|254780270|r 469 FVDHYLEVEYDLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNH 522 (820)
Q Consensus 469 f~d~y~~~~~dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~ 522 (820)
T Consensus 279 EmDGF~----~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe--~IlkvH 332 (596)
T COG0465 279 EMDGFG----GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGRE--QILKVH 332 (596)
T ss_pred HHCCCC----CCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHH--HHHHHH
T ss_conf 201578----887548852678743331765288776625544785156578--887886