HHsearch alignment for GI: 254780270 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=99.10 E-value=4.1e-09 Score=87.81 Aligned_cols=154 Identities=23% Similarity=0.295 Sum_probs=93.7
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEE-------------EEECCCCCCH
Q ss_conf 5201168999999999999842444673-5998605656502799999977088249-------------9861888888
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGL-ILCFVGPPGVGKTSLAQSIAKATGRQYV-------------RMSLGGVYDE 405 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~-il~l~gppgvGKts~~~sia~al~r~f~-------------~islgg~~d~ 405 (820)
T Consensus 2 ~~~~~~~~~~~l~~~~--~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQA--LESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CCCCCHHHHHHHHHHH--HHCC---CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCE
T ss_conf 6433235899999999--8658---8876100379999978999999999965866433455200224443202568865
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHCC------CCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCC
Q ss_conf 88356320014567128999998327------887399993315542311771155665540-60016813320103523
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRAK------RSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEY 478 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~~------~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~ 478 (820)
T Consensus 77 lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lEep~-------------- 137 (325)
T COG0470 77 LELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLEEPP-------------- 137 (325)
T ss_pred EEECCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH----HHHHHHHHHCCCCC--------------
T ss_conf 997732133330-06999999998604465667726999732032698----88876754332488--------------
Q ss_pred CCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 644279999348655-44131172479982587868999899
Q gi|254780270|r 479 DLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIA 519 (820)
Q Consensus 479 dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~ 519 (820)
T Consensus 138 --~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWL 177 (325)
T ss_pred --CCEEEEEEECCHHHCHHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf --8716999749855564787756078876774188999985