HHsearch alignment for GI: 254780270 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=98.15  E-value=5.3e-05  Score=56.71  Aligned_cols=174  Identities=22%  Similarity=0.378  Sum_probs=99.1

Q ss_pred             HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------CCEEEEECCCCCCHHHHC
Q ss_conf             5201168999999999999842444673599860565650279999997708----------824998618888888835
Q gi|254780270|r  340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG----------RQYVRMSLGGVYDEADIR  409 (820)
Q Consensus       340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~----------r~f~~islgg~~d~~~i~  409 (820)
T Consensus       171 PvIGRd~EI~r~iqIL~-RR~KNN---P--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyR  244 (786)
T COG0542         171 PVIGRDEEIRRTIQILS-RRTKNN---P--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYR  244 (786)
T ss_pred             CCCCHHHHHHHHHHHHH-CCCCCC---C--EEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCC
T ss_conf             77374799999999983-568899---8--47668988899999899999746999978758879971487674646535


Q ss_pred             CCCCCCCCCCCHHH---HHHHHHCCCCCEEEEEECHHHH-HHHC-C---CCHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf             63200145671289---9999832788739999331554-2311-7---7115566554060016813320103523644
Q gi|254780270|r  410 GHRRTYIGSMPGRI---IQSLKRAKRSNPLLLLDEIDKM-GSDL-R---GDPSAALLEVLDPAQNSSFVDHYLEVEYDLS  481 (820)
Q Consensus       410 gh~~ty~ga~pg~i---i~~l~~~~~~npv~~ldeidk~-~~~~-~---gdp~~allevldp~qn~~f~d~y~~~~~dls  481 (820)
T Consensus       245 -------GeFEeRlk~vl~ev~~~~--~vILFIDEiHtiVGAG~~~g~a~DAaNiLKPaLAR---Ge------------L  300 (786)
T COG0542         245 -------GEFEERLKAVLKEVEKSK--NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR---GE------------L  300 (786)
T ss_pred             -------CCHHHHHHHHHHHHHCCC--CEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC---CC------------E
T ss_conf             -------738999999999985179--84999823554057776666651256646778745---87------------3


Q ss_pred             CEEEEEECCC----CCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             2799993486----5544131172479982587868999899986089899862578131322899999997
Q gi|254780270|r  482 DVMFIMTANT----LNIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDII  549 (820)
Q Consensus       482 ~v~fi~tan~----~~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii  549 (820)
T Consensus       301 ~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG-lk~~yE~hH-----~V~i~D~Al~aAv  366 (786)
T COG0542         301 RCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG-LKERYEAHH-----GVRITDEALVAAV  366 (786)
T ss_pred             EEEEECCHHHHHHHHHHCHHHHHCCCEEECCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECHHHHHHHH
T ss_conf             79973558999887330667784675102799898999999987-788887706-----9643379999999