HHsearch alignment for GI: 254780270 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=96.64 E-value=0.05 Score=34.21 Aligned_cols=160 Identities=26% Similarity=0.346 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0467899985222478857888889999999-875311025789999987654041587663221068899877665201
Q gi|254780270|r 265 RDEISDFEARISKIRLSKEAREKALSELQKL-RQMNPLSAESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFG 343 (820)
Q Consensus 265 ~~Ei~el~~Ki~~~~lp~e~~~~~~kEl~rL-~~m~~~s~E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyG 343 (820)
T Consensus 66 e~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~--------------------------~~~~~v~--------- 110 (340)
T COG0552 66 EDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKI--------------------------KDEETVK--------- 110 (340)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC--------------------------CCHHHHH---------
T ss_conf 88999999999970246999999999999875102368--------------------------9889999---------
Q ss_pred HHHHHHHHHHHHHH-------HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCC
Q ss_conf 16899999999999-------98424446735998605656502799999977088249986188888888356320014
Q gi|254780270|r 344 LEKVKERIIEYLAV-------QMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYI 416 (820)
Q Consensus 344 l~~vK~rile~lav-------~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ 416 (820)
T Consensus 111 -~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~-D---------TFR 179 (340)
T COG0552 111 -EALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG-D---------TFR 179 (340)
T ss_pred -HHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEC-C---------HHH
T ss_conf -99999999984655444436552358986799999348886371799999999978986999823-3---------478
Q ss_pred CCCCHHHHHHHHHC-CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC
Q ss_conf 56712899999832-788739999331554231177115566554060016813320103523644279999348655
Q gi|254780270|r 417 GSMPGRIIQSLKRA-KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN 493 (820)
Q Consensus 417 ga~pg~ii~~l~~~-~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~ 493 (820)
T Consensus 180 Aa---AiEQL~~w~er~gv~vI--------~~~~G~DpAaVafDAi~~Akar~~------------DvvliDTAGRLh 234 (340)
T COG0552 180 AA---AIEQLEVWGERLGVPVI--------SGKEGADPAAVAFDAIQAAKARGI------------DVVLIDTAGRLH 234 (340)
T ss_pred HH---HHHHHHHHHHHHCCEEE--------CCCCCCCCHHHHHHHHHHHHHCCC------------CEEEEECCCCCC
T ss_conf 99---99999999999599278--------259999808999999999997699------------999996755445