HHsearch alignment for GI: 254780270 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=99.45 E-value=7.3e-12 Score=108.65 Aligned_cols=184 Identities=21% Similarity=0.346 Sum_probs=136.3
Q ss_pred CEECCCHHHHHHHHCCC-CCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEEC---CCCCEEECCCHHHHHHHHHHHH
Q ss_conf 20127967867530520-0033200022336500000000016807999999974---8997244325689999999999
Q gi|254780270|r 582 TTVSINENNLQDYLGVP-RYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMP---GKGEITITGNLKEIMKESILAA 657 (820)
Q Consensus 582 ~~~~i~~~~l~~~lg~~-~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~---g~g~l~lTG~lg~vmkES~~~A 657 (820)
T Consensus 266 GvFeM~~~GL~eV~npS~lFL~er~~~--~~GS~v~~~~EGtRpllvEvQALv~~s~~~nPrR~~~G~------D~nRl~ 337 (456)
T COG1066 266 GVFEMTENGLREVSNPSALFLSERGEQ--TPGSAVVVVMEGTRPLLVEIQALVSPSSFGNPRRVAVGL------DQNRLA 337 (456)
T ss_pred EEEEEECCCEEEECCCHHHHHHCCCCC--CCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECC------CHHHHH
T ss_conf 688984388468038278674226778--998679999962663598861203666688870276053------755899
Q ss_pred HHHHHHHHH-HCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHH
Q ss_conf 999999888-6299855742078147448888478887306899999999983688875610663685030250006568
Q gi|254780270|r 658 SSYVRSKAT-TFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLK 736 (820)
Q Consensus 658 ~s~~k~~~~-~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~ 736 (820)
T Consensus 338 mll--AVLek~~gl~---l~~~Dvyvnva-GG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~GeIR~V~~~~ 411 (456)
T COG1066 338 MLL--AVLEKRLGLP---LGDQDVYVNVA-GGVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVPRGE 411 (456)
T ss_pred HHH--HHHHHHCCCC---CCCCCEEEECC-CCEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCHH
T ss_conf 999--9999861986---66863799804-87765772688999999999863888998718999503574254267588
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf 999999970996998036775507761488770979998193999888760
Q gi|254780270|r 737 EKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHAL 787 (820)
Q Consensus 737 eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al 787 (820)
T Consensus 412 ~RlkEA~klGFk~aivP~~~~~--------~~~~~~~~~v~~l~~a~~~~~ 454 (456)
T COG1066 412 RRLKEAAKLGFKRAIVPKGNIP--------LPEGIKVIGVSTLAEALEVVF 454 (456)
T ss_pred HHHHHHHHCCCCEEECCCCCCC--------CCCCCEEEEEECHHHHHHHHH
T ss_conf 9999999758977974687677--------888815998500999999874