HHsearch alignment for GI: 254780270 and conserved domain: COG1066

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=99.45  E-value=7.3e-12  Score=108.65  Aligned_cols=184  Identities=21%  Similarity=0.346  Sum_probs=136.3

Q ss_pred             CEECCCHHHHHHHHCCC-CCCCCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEEC---CCCCEEECCCHHHHHHHHHHHH
Q ss_conf             20127967867530520-0033200022336500000000016807999999974---8997244325689999999999
Q gi|254780270|r  582 TTVSINENNLQDYLGVP-RYKYGKIEGEDQVGIVTGLAWTEVGGEILTVEGVIMP---GKGEITITGNLKEIMKESILAA  657 (820)
Q Consensus       582 ~~~~i~~~~l~~~lg~~-~~~~~~~~~~~~~G~v~GLa~t~~GG~~l~IE~~~~~---g~g~l~lTG~lg~vmkES~~~A  657 (820)
T Consensus       266 GvFeM~~~GL~eV~npS~lFL~er~~~--~~GS~v~~~~EGtRpllvEvQALv~~s~~~nPrR~~~G~------D~nRl~  337 (456)
T COG1066         266 GVFEMTENGLREVSNPSALFLSERGEQ--TPGSAVVVVMEGTRPLLVEIQALVSPSSFGNPRRVAVGL------DQNRLA  337 (456)
T ss_pred             EEEEEECCCEEEECCCHHHHHHCCCCC--CCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECC------CHHHHH
T ss_conf             688984388468038278674226778--998679999962663598861203666688870276053------755899


Q ss_pred             HHHHHHHHH-HCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEECCHH
Q ss_conf             999999888-6299855742078147448888478887306899999999983688875610663685030250006568
Q gi|254780270|r  658 SSYVRSKAT-TFGIIPSAFNEINIHVHVPEGATPKDGPSAGIAMATAIVSIMTCIPVYKNVAMTGELTLRGRVLPIGGLK  736 (820)
Q Consensus       658 ~s~~k~~~~-~~~~~~~~~~~~diHih~p~Ga~pKDGPSAGi~i~tal~S~~~~~~v~~~iAmTGEitl~G~VlpiGGi~  736 (820)
T Consensus       338 mll--AVLek~~gl~---l~~~Dvyvnva-GG~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~GeIR~V~~~~  411 (456)
T COG1066         338 MLL--AVLEKRLGLP---LGDQDVYVNVA-GGVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVPRGE  411 (456)
T ss_pred             HHH--HHHHHHCCCC---CCCCCEEEECC-CCEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCHH
T ss_conf             999--9999861986---66863799804-87765772688999999999863888998718999503574254267588


Q ss_pred             HHHHHHHHCCCCEEECCHHHHHHHHHCCHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf             999999970996998036775507761488770979998193999888760
Q gi|254780270|r  737 EKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMGEVLKHAL  787 (820)
Q Consensus       737 eK~laA~raGi~~viiP~~N~~d~~~ip~~~~~~l~~~~v~~~~evl~~al  787 (820)
T Consensus       412 ~RlkEA~klGFk~aivP~~~~~--------~~~~~~~~~v~~l~~a~~~~~  454 (456)
T COG1066         412 RRLKEAAKLGFKRAIVPKGNIP--------LPEGIKVIGVSTLAEALEVVF  454 (456)
T ss_pred             HHHHHHHHCCCCEEECCCCCCC--------CCCCCEEEEEECHHHHHHHHH
T ss_conf             9999999758977974687677--------888815998500999999874