HHsearch alignment for GI: 254780270 and conserved domain: COG1067

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=1.5e-38  Score=310.67  Aligned_cols=345  Identities=24%  Similarity=0.324  Sum_probs=255.3

Q ss_pred             CCEEEEEECHHHHHHHCCCCHHHHHHH--HCCCCCCCCEEEEEC---CCCCCCCCEEEEEECCCC-CCCHHHCCCEEE--
Q ss_conf             873999933155423117711556655--406001681332010---352364427999934865-544131172479--
Q gi|254780270|r  433 SNPLLLLDEIDKMGSDLRGDPSAALLE--VLDPAQNSSFVDHYL---EVEYDLSDVMFIMTANTL-NIPLPLMDRMEI--  504 (820)
Q Consensus       433 ~npv~~ldeidk~~~~~~gdp~~alle--vldp~qn~~f~d~y~---~~~~dls~v~fi~tan~~-~i~~~l~drme~--  504 (820)
T Consensus       225 ngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~-klI~~Gn~~~l~~l~~~~~~r~~g~~  303 (647)
T COG1067         225 NGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDL-KLILAGNREDLEDLHEPDRSRIEGFG  303 (647)
T ss_pred             CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEECCHHHHHHHCCCCHHHHHHCC
T ss_conf             58479997566328398999999998244566576740248615788855654-89940889999765534777884055


Q ss_pred             --EEECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHH---HH-HHHHHHHHHHHHHHH
Q ss_conf             --98258786-899989998608989986257813132289999999731774102347---88-879999898765421
Q gi|254780270|r  505 --IRIAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRS---FE-RALMKIARKAVTKIV  577 (820)
Q Consensus       505 --i~~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~---l~-r~i~~i~r~~~~~~~  577 (820)
T Consensus       304 y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~---~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~-~A~~ia  379 (647)
T COG1067         304 YEAEFEDTMPITDANRSKLVQFYVQELARDG---NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVR-EAGDIA  379 (647)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHH-HHHHHH
T ss_conf             6899768889986899999999999998628---999888899999999999861656502148999999999-866888


Q ss_pred             CCCCCEECCCHHHHHHHHCCCCCCC---------CC-------HHCCCCCCCCCEEEECCCCCE-E----EEEEEEEECC
Q ss_conf             1785201279678675305200033---------20-------002233650000000001680-7----9999999748
Q gi|254780270|r  578 KNSDTTVSINENNLQDYLGVPRYKY---------GK-------IEGEDQVGIVTGLAWTEVGGE-I----LTVEGVIMPG  636 (820)
Q Consensus       578 ~~~~~~~~i~~~~l~~~lg~~~~~~---------~~-------~~~~~~~G~v~GLa~t~~GG~-~----l~IE~~~~~g  636 (820)
T Consensus       380 ~~~~~~-~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~~~~~li~t~G~~VG~ingLsV~~~~~~~~~g~p~~is~~~~~g  458 (647)
T COG1067         380 VSEGRK-LITAEDVEEALQKRELREGQLAERYIEDIKGGQILIETEGERVGQINGLSVIEVPGHHAFGEPARISCAVHKG  458 (647)
T ss_pred             HCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf             537866-4769999999987466789999998998755658986536220046015898517864356203787777517


Q ss_pred             CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCCCC------CCCCCHHHHHHHHHHHHHHC
Q ss_conf             997244325689999999999999999888629985574207814744888847------88873068999999999836
Q gi|254780270|r  637 KGEITITGNLKEIMKESILAASSYVRSKATTFGIIPSAFNEINIHVHVPEGATP------KDGPSAGIAMATAIVSIMTC  710 (820)
Q Consensus       637 ~g~l~lTG~lg~vmkES~~~A~s~~k~~~~~~~~~~~~~~~~diHih~p~Ga~p------KDGPSAGi~i~tal~S~~~~  710 (820)
T Consensus       459 ~g~i~d~er~~~la-g~I~~k~~mI~~~---~~~~---~~~~d~~i~fs~s~~~eqsy~~vDGDSAS~A~~~aliSAl~~  531 (647)
T COG1067         459 DGEIVDIERKAELA-GNIHNKGMMIKQA---FLMS---ILNYDIHIPFSASLVFEQSYGEVDGDSASLAEACALISALSK  531 (647)
T ss_pred             CCCEEEHHHHHHHH-HHHHHHHHHHHHH---HCCC---CCCCCEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             88513213455555-6677889999998---5577---435855667766898875236666864889999999999854


Q ss_pred             CCCCCCCEEEEEEEECCEEEEECCHHHHHH-------HHHHCCCCEEECCHHHHHHHHHCCHHHH-----CCCEEEECCC
Q ss_conf             888756106636850302500065689999-------9997099699803677550776148877-----0979998193
Q gi|254780270|r  711 IPVYKNVAMTGELTLRGRVLPIGGLKEKLL-------AALRAGVTKVLIPEENIKDLMDIPENVK-----NGLEIIPVSF  778 (820)
Q Consensus       711 ~~v~~~iAmTGEitl~G~VlpiGGi~eK~l-------aA~raGi~~viiP~~N~~d~~~ip~~~~-----~~l~~~~v~~  778 (820)
T Consensus       532 ~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~-l~~~v~~av~~g~f~I~~V~~  610 (647)
T COG1067         532 IPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLS-LSEDVVKAVKEGKFEIWPVET  610 (647)
T ss_pred             CCCCCCEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH-CCHHHHHHHHCCCEEEEEECC
T ss_conf             8875634678633367724544773053000488888876158854883313186640-238788775448469999572


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9998887602788
Q gi|254780270|r  779 MGEVLKHALLRMP  791 (820)
Q Consensus       779 ~~evl~~al~~~~  791 (820)
T Consensus       611 i~eal~~~~~~~~  623 (647)
T COG1067         611 IDEALELLLGKGE  623 (647)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999827874