HHsearch alignment for GI: 254780270 and conserved domain: COG1219

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.25  E-value=1.5e-10  Score=98.76  Aligned_cols=259  Identities=22%  Similarity=0.305  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HC-CC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             688998776652011689999999999998----42-44-------4673599860565650279999997708824998
Q gi|254780270|r  330 LDFAIRILDQDHFGLEKVKERIIEYLAVQM----RV-IK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM  397 (820)
Q Consensus       330 l~~a~~iLd~~hyGl~~vK~rile~lav~~----~~-~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~i  397 (820)
T Consensus        52 P~eik~~Ld~YVIGQe~AKKvLs--VAVYNHYKRl~~~~~~~dvEL~KS-NILLiGPTGsGKTlLAqTLAk~LnVPFa--  126 (408)
T COG1219          52 PKEIKAHLDEYVIGQEQAKKVLS--VAVYNHYKRLNNKEDNDDVELSKS-NILLIGPTGSGKTLLAQTLAKILNVPFA--  126 (408)
T ss_pred             HHHHHHHHHHHEECCHHHHCEEE--EEEEHHHHHHHCCCCCCCEEEEEC-CEEEECCCCCCHHHHHHHHHHHHCCCEE--
T ss_conf             69999986524326254310346--641068899860488776353203-1799888997577999999998489847--


Q ss_pred             ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC------CCEEEEEECHHHHHHHC-C----CCH-----HHHHHHHC
Q ss_conf             61888888883563200145671289999983278------87399993315542311-7----711-----55665540
Q gi|254780270|r  398 SLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR------SNPLLLLDEIDKMGSDL-R----GDP-----SAALLEVL  461 (820)
Q Consensus       398 slgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~------~npv~~ldeidk~~~~~-~----gdp-----~~allevl  461 (820)
T Consensus       127 ----iADATtLTE--AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKii  200 (408)
T COG1219         127 ----IADATTLTE--AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKII  200 (408)
T ss_pred             ----ECCCCCHHH--CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             ----514441210--66355008999999998764588888288599851025420578987234367358999999997


Q ss_pred             C------CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHH--------------------------------------
Q ss_conf             6------00168133201035236442799993486554413--------------------------------------
Q gi|254780270|r  462 D------PAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLP--------------------------------------  497 (820)
Q Consensus       462 d------p~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~--------------------------------------  497 (820)
T Consensus       201 EGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLv  280 (408)
T COG1219         201 EGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLV  280 (408)
T ss_pred             CCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf             07510239998887984204887376346782440103999999862687424566445344441288998754868788


Q ss_pred             -------HCCCEEEEE-ECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHH
Q ss_conf             -------117247998-2587868999899---98608989986257813132289999999731-77410234788879
Q gi|254780270|r  498 -------LMDRMEIIR-IAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERAL  565 (820)
Q Consensus       498 -------l~drme~i~-~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i  565 (820)
T Consensus       281 kFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~  360 (408)
T COG1219         281 KFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSII  360 (408)
T ss_pred             HCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             70883887266632646101599999999726517899999999644691699748999999999998433535799999


Q ss_pred             HHHHHHHHHHHHCCC-CCEECCCHHHHHHHHCCCC
Q ss_conf             999898765421178-5201279678675305200
Q gi|254780270|r  566 MKIARKAVTKIVKNS-DTTVSINENNLQDYLGVPR  599 (820)
Q Consensus       566 ~~i~r~~~~~~~~~~-~~~~~i~~~~l~~~lg~~~  599 (820)
T Consensus       361 E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l  395 (408)
T COG1219         361 EELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLL  395 (408)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCEE
T ss_conf             99999988527886785089976888478888727