HHsearch alignment for GI: 254780270 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.25 E-value=1.5e-10 Score=98.76 Aligned_cols=259 Identities=22% Similarity=0.305 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HC-CC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 688998776652011689999999999998----42-44-------4673599860565650279999997708824998
Q gi|254780270|r 330 LDFAIRILDQDHFGLEKVKERIIEYLAVQM----RV-IK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 (820)
Q Consensus 330 l~~a~~iLd~~hyGl~~vK~rile~lav~~----~~-~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~i 397 (820)
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLs--VAVYNHYKRl~~~~~~~dvEL~KS-NILLiGPTGsGKTlLAqTLAk~LnVPFa-- 126 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLS--VAVYNHYKRLNNKEDNDDVELSKS-NILLIGPTGSGKTLLAQTLAKILNVPFA-- 126 (408)
T ss_pred HHHHHHHHHHHEECCHHHHCEEE--EEEEHHHHHHHCCCCCCCEEEEEC-CEEEECCCCCCHHHHHHHHHHHHCCCEE--
T ss_conf 69999986524326254310346--641068899860488776353203-1799888997577999999998489847--
Q ss_pred ECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC------CCEEEEEECHHHHHHHC-C----CCH-----HHHHHHHC
Q ss_conf 61888888883563200145671289999983278------87399993315542311-7----711-----55665540
Q gi|254780270|r 398 SLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR------SNPLLLLDEIDKMGSDL-R----GDP-----SAALLEVL 461 (820)
Q Consensus 398 slgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~------~npv~~ldeidk~~~~~-~----gdp-----~~allevl 461 (820)
T Consensus 127 ----iADATtLTE--AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKii 200 (408)
T COG1219 127 ----IADATTLTE--AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKII 200 (408)
T ss_pred ----ECCCCCHHH--CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ----514441210--66355008999999998764588888288599851025420578987234367358999999997
Q ss_pred C------CCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHH--------------------------------------
Q ss_conf 6------00168133201035236442799993486554413--------------------------------------
Q gi|254780270|r 462 D------PAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLP-------------------------------------- 497 (820)
Q Consensus 462 d------p~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~-------------------------------------- 497 (820)
T Consensus 201 EGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLv 280 (408)
T COG1219 201 EGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLV 280 (408)
T ss_pred CCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 07510239998887984204887376346782440103999999862687424566445344441288998754868788
Q ss_pred -------HCCCEEEEE-ECCCCHHHHHHHH---HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CCCCCHHHHHHHHH
Q ss_conf -------117247998-2587868999899---98608989986257813132289999999731-77410234788879
Q gi|254780270|r 498 -------LMDRMEIIR-IAGYTEEEKLQIA---KNHLVKKVLTEHALKQEECCISDGVLLDIIRL-FTHEAGVRSFERAL 565 (820)
Q Consensus 498 -------l~drme~i~-~~~y~~~ek~~i~---~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~-Yt~EaGvR~l~r~i 565 (820)
T Consensus 281 kFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~ 360 (408)
T COG1219 281 KFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSII 360 (408)
T ss_pred HCCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 70883887266632646101599999999726517899999999644691699748999999999998433535799999
Q ss_pred HHHHHHHHHHHHCCC-CCEECCCHHHHHHHHCCCC
Q ss_conf 999898765421178-5201279678675305200
Q gi|254780270|r 566 MKIARKAVTKIVKNS-DTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~-~~~~~i~~~~l~~~lg~~~ 599 (820)
T Consensus 361 E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p~l 395 (408)
T COG1219 361 EELLLDVMFELPSLEDVEKVVITEEVVDGNAEPLL 395 (408)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCEE
T ss_conf 99999988527886785089976888478888727