HHsearch alignment for GI: 254780270 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.26 E-value=2.6e-09 Score=89.38 Aligned_cols=169 Identities=24% Similarity=0.326 Sum_probs=114.3
Q ss_pred HHHHHHCCCCCEEEEEECHHHHHHHC-CC--CHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----
Q ss_conf 99998327887399993315542311-77--1155-----665540600168133201035236442799993486----
Q gi|254780270|r 424 IQSLKRAKRSNPLLLLDEIDKMGSDL-RG--DPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT---- 491 (820)
Q Consensus 424 i~~l~~~~~~npv~~ldeidk~~~~~-~g--dp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~---- 491 (820)
T Consensus 241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEG---stV~TKyG~V--kTdHILFIasGAFh~sK 315 (444)
T COG1220 241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEG---STVSTKYGPV--KTDHILFIASGAFHVAK 315 (444)
T ss_pred HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCC---CEEECCCCCC--CCCEEEEEECCCEECCC
T ss_conf 999999988569089734667874378899886643201021031057---5443154440--14437887148200378
Q ss_pred -CC-CCHHHCCCEEE-EEECCCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC------CCCCCHHH
Q ss_conf -55-44131172479-9825878689998999---8608989986257813132289999999731------77410234
Q gi|254780270|r 492 -LN-IPLPLMDRMEI-IRIAGYTEEEKLQIAK---NHLVKKVLTEHALKQEECCISDGVLLDIIRL------FTHEAGVR 559 (820)
Q Consensus 492 -~~-i~~~l~drme~-i~~~~y~~~ek~~i~~---~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~------Yt~EaGvR 559 (820)
T Consensus 316 PSDLiPE-LQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 316 PSDLIPE-LQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred HHHCCHH-HCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 1321766-627773488704489989999963760789999999973158348853799999999999855430001178
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 788879999898765421178520127967867530520
Q gi|254780270|r 560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
T Consensus 395 RLhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 395 RLHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 899999999987070587789975897589999999877