HHsearch alignment for GI: 254780270 and conserved domain: COG1220

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.26  E-value=2.6e-09  Score=89.38  Aligned_cols=169  Identities=24%  Similarity=0.326  Sum_probs=114.3

Q ss_pred             HHHHHHCCCCCEEEEEECHHHHHHHC-CC--CHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----
Q ss_conf             99998327887399993315542311-77--1155-----665540600168133201035236442799993486----
Q gi|254780270|r  424 IQSLKRAKRSNPLLLLDEIDKMGSDL-RG--DPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----  491 (820)
Q Consensus       424 i~~l~~~~~~npv~~ldeidk~~~~~-~g--dp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----  491 (820)
T Consensus       241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEG---stV~TKyG~V--kTdHILFIasGAFh~sK  315 (444)
T COG1220         241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEG---STVSTKYGPV--KTDHILFIASGAFHVAK  315 (444)
T ss_pred             HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCC---CEEECCCCCC--CCCEEEEEECCCEECCC
T ss_conf             999999988569089734667874378899886643201021031057---5443154440--14437887148200378


Q ss_pred             -CC-CCHHHCCCEEE-EEECCCCHHHHHHHHH---HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC------CCCCCHHH
Q ss_conf             -55-44131172479-9825878689998999---8608989986257813132289999999731------77410234
Q gi|254780270|r  492 -LN-IPLPLMDRMEI-IRIAGYTEEEKLQIAK---NHLVKKVLTEHALKQEECCISDGVLLDIIRL------FTHEAGVR  559 (820)
Q Consensus       492 -~~-i~~~l~drme~-i~~~~y~~~ek~~i~~---~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~------Yt~EaGvR  559 (820)
T Consensus       316 PSDLiPE-LQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR  394 (444)
T COG1220         316 PSDLIPE-LQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR  394 (444)
T ss_pred             HHHCCHH-HCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             1321766-627773488704489989999963760789999999973158348853799999999999855430001178


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf             788879999898765421178520127967867530520
Q gi|254780270|r  560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP  598 (820)
Q Consensus       560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~  598 (820)
T Consensus       395 RLhTvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l  433 (444)
T COG1220         395 RLHTVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDL  433 (444)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf             899999999987070587789975897589999999877