HHsearch alignment for GI: 254780270 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=98.08 E-value=0.00034 Score=50.61 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=134.3
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCCCC---HHHHC
Q ss_conf 76652011689999999999998424446735998605656502799999977----088249986188888---88835
Q gi|254780270|r 337 LDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKA----TGRQYVRMSLGGVYD---EADIR 409 (820)
Q Consensus 337 Ld~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~a----l~r~f~~islgg~~d---~~~i~ 409 (820)
T Consensus 80 LIG~~~~~~~~~eqik~------~ap--~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLF 151 (403)
T COG1221 80 LIGESPSLQELREQIKA------YAP--SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELF 151 (403)
T ss_pred HHCCCHHHHHHHHHHHH------HCC--CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHHHHH
T ss_conf 63568889999999986------189--9984798668875388999999986121358987997777737677777773
Q ss_pred CCCC-CCCCCC---CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEE
Q ss_conf 6320-014567---128999998327887399993315542311771155665540600168133201035236442799
Q gi|254780270|r 410 GHRR-TYIGSM---PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMF 485 (820)
Q Consensus 410 gh~~-ty~ga~---pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~f 485 (820)
T Consensus 152 G~~kGaftGa~~~k~Glfe~A------~GGtLfLDEI~~LP~~~Q----~kLl~~le~---g~~~rvG~~~~-~~~dVRl 217 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQA------NGGTLFLDEIHRLPPEGQ----EKLLRVLEE---GEYRRVGGSQP-RPVDVRL 217 (403)
T ss_pred CCCCCEEECCCCCCCCHHEEC------CCCEEEHHHHHHCCHHHH----HHHHHHHHC---CCEEECCCCCC-CCCCCEE
T ss_conf 200000025667867642052------797776563653798589----999999871---86576688888-6777404
Q ss_pred EEECCC-C-C-CCH--HHCCC--EEEEEECCCCHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 993486-5-5-441--31172--47998258786899989--99860898998625781313228999999973177410
Q gi|254780270|r 486 IMTANT-L-N-IPL--PLMDR--MEIIRIAGYTEEEKLQI--AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 486 i~tan~-~-~-i~~--~l~dr--me~i~~~~y~~~ek~~i--~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
T Consensus 218 i~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER-~~Di~~L~e~Fl~~~~~~l~~~~~--~~~~~a~~~L-~~y~~pG 293 (403)
T COG1221 218 ICATTEDLEEAVLAGADLTRRLNILTITLPPLRER-KEDILLLAEHFLKSEARRLGLPLS--VDSPEALRAL-LAYDWPG 293 (403)
T ss_pred EECCCCCHHHHHHHHCCHHHHHCCCEECCCCHHHC-HHHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHH-HHCCCCC
T ss_conf 51356687999874052556416754318972435-555999999999999997399988--8889999999-8488998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 234788879999898765
Q gi|254780270|r 557 GVRSFERALMKIARKAVT 574 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~ 574 (820)
T Consensus 294 NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 294 NIRELKNLVERAVAQASG 311 (403)
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 399999999999997354