HHsearch alignment for GI: 254780270 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.24 E-value=1.9e-10 Score=97.98 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=141.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCC
Q ss_conf 665201168999999999999842444-------6735998605656502799999977088249986188888888356
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKN-------KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~-------~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~g 410 (820)
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv------gSElV- 222 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV------GSELV- 222 (406)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEC------CHHHH-
T ss_conf 65335889999999998403366888999749999971276689997588999998720586699942------19999-
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHH-C----CCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 3200145671289999983278873-9999331554231-1----7711--55665540600168133201035236442
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSD-L----RGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSD 482 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~-~----~gdp--~~allevldp~qn~~f~d~y~~~~~dls~ 482 (820)
T Consensus 223 --qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~--qlDGFD~--------~~n 290 (406)
T COG1222 223 --QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLN--QLDGFDP--------RGN 290 (406)
T ss_pred --HHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCC--------CCC
T ss_conf --9983411699999999874149849998311223111136888850999999999998--6058897--------887
Q ss_pred EEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 79999348655-44131-----1724799825878689998999860898998625781313228999999973177410
Q gi|254780270|r 483 VMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEA 556 (820)
Q Consensus 483 v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~Ea 556 (820)
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRk--IEfplPd~~gR~~Il~IHt-----rkM~l~~-dvd~-----e~la~~~~g~s 357 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRK--IEFPLPDEEGRAEILKIHT-----RKMNLAD-DVDL-----ELLARLTEGFS 357 (406)
T ss_pred EEEEEECCCCCCCCHHHCCCCCCCCE--EECCCCCHHHHHHHHHHHH-----HHCCCCC-CCCH-----HHHHHHCCCCC
T ss_conf 68998558855557665088754530--1168989789999999876-----2146766-7699-----99987538995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 234788879999898765421178520127967867530
Q gi|254780270|r 557 GVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYL 595 (820)
Q Consensus 557 GvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~l 595 (820)
T Consensus 358 G-----AdlkaictEAGm~AiR~~R--~~Vt~~DF~~Av 389 (406)
T COG1222 358 G-----ADLKAICTEAGMFAIRERR--DEVTMEDFLKAV 389 (406)
T ss_pred H-----HHHHHHHHHHHHHHHHHCC--CEECHHHHHHHH
T ss_conf 6-----7799999987599998604--733399999999