HHsearch alignment for GI: 254780270 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=99.43 E-value=1.1e-11 Score=107.36 Aligned_cols=250 Identities=24% Similarity=0.351 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHH---HHHHHHHHHHCCCCCCCEEEEECCCCCCHH
Q ss_conf 57899999876540415876632210688998776652011689999---999999998424446735998605656502
Q gi|254780270|r 304 ESSVVRNYLDWLLGVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKER---IIEYLAVQMRVIKNKGLILCFVGPPGVGKT 380 (820)
Q Consensus 304 E~~v~r~Yld~~~~lPW~~~t~~~~dl~~a~~iLd~~hyGl~~vK~r---ile~lav~~~~~~~~g~il~l~gppgvGKt 380 (820)
T Consensus 92 ~~~i~~st~i~vl~~~~~~~~e~~~~i------t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKT 165 (368)
T COG1223 92 GGGIITSTTIFVLETPREEDREIISDI------TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKT 165 (368)
T ss_pred CCCEECCEEEEEECCCCHHHHHHHCCC------CHHHHHCHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHH
T ss_conf 883102237999617514555661366------17664163988888799999964968763457541687789996487
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECHHHHHH-----HCCCCHH
Q ss_conf 79999997708824998618888888835632001456712899999832-78873999933155423-----1177115
Q gi|254780270|r 381 SLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA-KRSNPLLLLDEIDKMGS-----DLRGDPS 454 (820)
Q Consensus 381 s~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~-~~~npv~~ldeidk~~~-----~~~gdp~ 454 (820)
T Consensus 166 m~Akalane~kvp~l~vk------at~liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVs 236 (368)
T COG1223 166 MMAKALANEAKVPLLLVK------ATELIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS 236 (368)
T ss_pred HHHHHHHCCCCCCEEEEC------HHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCHH
T ss_conf 999987254578548711------688888---77435989999999988751984998400245553045788645499
Q ss_pred ---HHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE-EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf ---566554060016813320103523644279999348655-4413117247-99825878689998999860898998
Q gi|254780270|r 455 ---AALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME-IIRIAGYTEEEKLQIAKNHLVKKVLT 529 (820)
Q Consensus 455 ---~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme-~i~~~~y~~~ek~~i~~~~l~p~~~~ 529 (820)
T Consensus 237 EiVNALLTelDgi~-en------------eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k----- 298 (368)
T COG1223 237 EIVNALLTELDGIK-EN------------EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK----- 298 (368)
T ss_pred HHHHHHHHHCCCCC-CC------------CCEEEEEECCCHHHCCHHHHHHHHHEEEEECCCHHHHHHHHHHHHH-----
T ss_conf 99999998501744-57------------7569995059846507888865565065648885899999999898-----
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 62578131322899999997317741-02347888799998987654211785201279678675305200
Q gi|254780270|r 530 EHALKQEECCISDGVLLDIIRLFTHE-AGVRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 530 ~~~~~~~~~~~~~~~i~~ii~~Yt~E-aGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
T Consensus 299 ~~P---lpv~~~---~~~~~~~-t~g~Sg-Rdikekvl----K~aLh~Ai~ed-~e~v~~edie~al~k~r 356 (368)
T COG1223 299 KFP---LPVDAD---LRYLAAK-TKGMSG-RDIKEKVL----KTALHRAIAED-REKVEREDIEKALKKER 356 (368)
T ss_pred HCC---CCCCCC---HHHHHHH-HCCCCC-HHHHHHHH----HHHHHHHHHHC-HHHHHHHHHHHHHHHHC
T ss_conf 589---765568---9999998-478772-06899999----99999998713-44433889999998633