HHsearch alignment for GI: 254780270 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=97.97 E-value=0.00015 Score=53.21 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 67359986056565027999999770882---499861888888883563200145671289999983278873999933
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDE 441 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~lde 441 (820)
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el--~~~Lk~~~~~--~~~~~~l~~~l~~~----dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL--LSKLKAAFDE--GRLEEKLLRELKKV----DLLIIDD 175 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHHHHHC--CCHHHHHHHHHHHC----CEEEEEC
T ss_conf 58828998999987999999999999983984999885999--9999998745--52689999887528----9899823
Q ss_pred HHHHHHHCCCCHHHHHHHHCC
Q ss_conf 155423117711556655406
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLD 462 (820)
Q Consensus 442 idk~~~~~~gdp~~allevld 462 (820)
T Consensus 176 lG~~~~~~~--~~~~~~q~I~ 194 (254)
T COG1484 176 IGYEPFSQE--EADLLFQLIS 194 (254)
T ss_pred CCCCCCCCH--HHHHHHHHHH
T ss_conf 677668815--5879999999