HHsearch alignment for GI: 254780270 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.41 E-value=4.3e-11 Score=102.81 Aligned_cols=179 Identities=30% Similarity=0.425 Sum_probs=130.9
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCC
Q ss_conf 66520116899999999999984244467359986056565027999999770882499861888888883563200145
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIG 417 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~g 417 (820)
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lD-HvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-Gp~le------------- 89 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALD-HVLLFGPPGLGKTTLAHIIANELGVNLKITS-GPALE------------- 89 (332)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEECC-CCCCC-------------
T ss_conf 88851839999999999999984498767-4786479987688899999998567737636-62015-------------
Q ss_pred CCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECC-------CCCCCCCEEEEEECC
Q ss_conf 6712899999832788739999331554231177115566554060016813320103-------523644279999348
Q gi|254780270|r 418 SMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLE-------VEYDLSDVMFIMTAN 490 (820)
Q Consensus 418 a~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~-------~~~dls~v~fi~tan 490 (820)
T Consensus 90 -K~gDlaaiLt~Le-~~DVLFIDEIHrl~~~--------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 90 -KPGDLAAILTNLE-EGDVLFIDEIHRLSPA--------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -CHHHHHHHHHCCC-CCCEEEEEHHHHCCHH--------HHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEEEEEECC
T ss_conf -7265999986398-6776777255314742--------89896467531057789724875534763799813751013
Q ss_pred CCC-CCHHHCCCEEEE-EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC
Q ss_conf 655-441311724799-8258786899989998608989986257813132289999999731
Q gi|254780270|r 491 TLN-IPLPLMDRMEII-RIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 491 ~~~-i~~~l~drme~i-~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~ 551 (820)
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a----------~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA----------KILGIEIDEEAALEIARR 212 (332)
T ss_pred CCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHH----------HHHCCCCCHHHHHHHHHH
T ss_conf 46645633688628604540588899999999888----------873877685799999986