HHsearch alignment for GI: 254780270 and conserved domain: COG2766

>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms].
Probab=95.88  E-value=0.033  Score=35.54  Aligned_cols=195  Identities=25%  Similarity=0.427  Sum_probs=109.5

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCC----CCC-------HH
Q ss_conf             652011689999999999998424446735998605656502799999977088-249986188----888-------88
Q gi|254780270|r  339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGG----VYD-------EA  406 (820)
Q Consensus       339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~islgg----~~d-------~~  406 (820)
T Consensus        76 ~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~pd  155 (649)
T COG2766          76 NDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFPPD  155 (649)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             65416899999999987524402116665530435678766789999998765278400366667688767886047977


Q ss_pred             H-------HCCCCCCCC-CCCCHHHHHHHHH----------CCCCCEEEE------------------------EECHHH
Q ss_conf             8-------356320014-5671289999983----------278873999------------------------933155
Q gi|254780270|r  407 D-------IRGHRRTYI-GSMPGRIIQSLKR----------AKRSNPLLL------------------------LDEIDK  444 (820)
Q Consensus       407 ~-------i~gh~~ty~-ga~pg~ii~~l~~----------~~~~npv~~------------------------ldeidk  444 (820)
T Consensus       156 ~l~~~l~~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~Vd-i~k  234 (649)
T COG2766         156 HLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKVD-ISK  234 (649)
T ss_pred             HHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHCCCEEEECCCCCCCCCCHHHHHCCCC-HHH
T ss_conf             7656654021624554158888778999887738740126888851122205302344899999834667604110-887


Q ss_pred             HHHHCCCCHHH------------HHH--------------HHCCCCCCCCEE-EEEC-CCCCCCCCEEEEEECCCC----
Q ss_conf             42311771155------------665--------------540600168133-2010-352364427999934865----
Q gi|254780270|r  445 MGSDLRGDPSA------------ALL--------------EVLDPAQNSSFV-DHYL-EVEYDLSDVMFIMTANTL----  492 (820)
Q Consensus       445 ~~~~~~gdp~~------------all--------------evldp~qn~~f~-d~y~-~~~~dls~v~fi~tan~~----  492 (820)
T Consensus       235 L~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~~~~i~~d---~lIvahsNesE~q~  311 (649)
T COG2766         235 LEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGIGAIPFD---GLIVAHSNESEWQT  311 (649)
T ss_pred             HHHCCCCCCHHHCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CEEEEECCCHHHHH
T ss_conf             865166882231444311004421789999972749999987353423755788876765667---60784167288887


Q ss_pred             ---C-CCHHHCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             ---5-4413117247998258---7868999899986089899862578131322899999
Q gi|254780270|r  493 ---N-IPLPLMDRMEIIRIAG---YTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLL  546 (820)
Q Consensus       493 ---~-i~~~l~drme~i~~~~---y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~  546 (820)
T Consensus       312 fk~n~~nEAf~dRi~~v~vPY~L~vseE~kIY-------EKll~~s~ls~--~h~APhTL~  363 (649)
T COG2766         312 FKNNKNNEAFLDRIYKVKVPYCLRVSEEAKIY-------EKLLQNSELSD--AHCAPHTLE  363 (649)
T ss_pred             HHCCCCHHHHHHHEEEEECCEEEEECHHHHHH-------HHHHCCCCCCC--CCCCCHHHH
T ss_conf             50387348887410465455012321888999-------99825466665--665805899