HHsearch alignment for GI: 254780270 and conserved domain: COG2766
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms].
Probab=95.88 E-value=0.033 Score=35.54 Aligned_cols=195 Identities=25% Similarity=0.427 Sum_probs=109.5
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCC----CCC-------HH
Q ss_conf 652011689999999999998424446735998605656502799999977088-249986188----888-------88
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGG----VYD-------EA 406 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~islgg----~~d-------~~ 406 (820)
T Consensus 76 ~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~pd 155 (649)
T COG2766 76 NDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFPPD 155 (649)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 65416899999999987524402116665530435678766789999998765278400366667688767886047977
Q ss_pred H-------HCCCCCCCC-CCCCHHHHHHHHH----------CCCCCEEEE------------------------EECHHH
Q ss_conf 8-------356320014-5671289999983----------278873999------------------------933155
Q gi|254780270|r 407 D-------IRGHRRTYI-GSMPGRIIQSLKR----------AKRSNPLLL------------------------LDEIDK 444 (820)
Q Consensus 407 ~-------i~gh~~ty~-ga~pg~ii~~l~~----------~~~~npv~~------------------------ldeidk 444 (820)
T Consensus 156 ~l~~~l~~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~Vd-i~k 234 (649)
T COG2766 156 HLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKVD-ISK 234 (649)
T ss_pred HHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHCCCEEEECCCCCCCCCCHHHHHCCCC-HHH
T ss_conf 7656654021624554158888778999887738740126888851122205302344899999834667604110-887
Q ss_pred HHHHCCCCHHH------------HHH--------------HHCCCCCCCCEE-EEEC-CCCCCCCCEEEEEECCCC----
Q ss_conf 42311771155------------665--------------540600168133-2010-352364427999934865----
Q gi|254780270|r 445 MGSDLRGDPSA------------ALL--------------EVLDPAQNSSFV-DHYL-EVEYDLSDVMFIMTANTL---- 492 (820)
Q Consensus 445 ~~~~~~gdp~~------------all--------------evldp~qn~~f~-d~y~-~~~~dls~v~fi~tan~~---- 492 (820)
T Consensus 235 L~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~~~~i~~d---~lIvahsNesE~q~ 311 (649)
T COG2766 235 LEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGIGAIPFD---GLIVAHSNESEWQT 311 (649)
T ss_pred HHHCCCCCCHHHCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CEEEEECCCHHHHH
T ss_conf 865166882231444311004421789999972749999987353423755788876765667---60784167288887
Q ss_pred ---C-CCHHHCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf ---5-4413117247998258---7868999899986089899862578131322899999
Q gi|254780270|r 493 ---N-IPLPLMDRMEIIRIAG---YTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLL 546 (820)
Q Consensus 493 ---~-i~~~l~drme~i~~~~---y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~ 546 (820)
T Consensus 312 fk~n~~nEAf~dRi~~v~vPY~L~vseE~kIY-------EKll~~s~ls~--~h~APhTL~ 363 (649)
T COG2766 312 FKNNKNNEAFLDRIYKVKVPYCLRVSEEAKIY-------EKLLQNSELSD--AHCAPHTLE 363 (649)
T ss_pred HHCCCCHHHHHHHEEEEECCEEEEECHHHHHH-------HHHHCCCCCCC--CCCCCHHHH
T ss_conf 50387348887410465455012321888999-------99825466665--665805899