HHsearch alignment for GI: 254780270 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=98.79 E-value=1.3e-07 Score=76.46 Aligned_cols=211 Identities=25% Similarity=0.322 Sum_probs=141.2
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCHHHH
Q ss_conf 01168999999999999842444673599860565650279999997708824-------------99861888888883
Q gi|254780270|r 342 FGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDEADI 408 (820)
Q Consensus 342 yGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~~~i 408 (820)
T Consensus 19 vGQe~v~~~L~nal~-----~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 19 VGQEHVVKTLSNALE-----NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred CCCHHHHHHHHHHHH-----HCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 364899999999998-----084233365137777671049999999956889877772253166686514886410113
Q ss_pred CCCCCCCCCCCCHHHHHHHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 563200145671289999983--278873999933155423117711556655406001681332010352364427999
Q gi|254780270|r 409 RGHRRTYIGSMPGRIIQSLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI 486 (820)
Q Consensus 409 ~gh~~ty~ga~pg~ii~~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi 486 (820)
T Consensus 94 DaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~a----fNALLKTL-------------EEPP--~hV~FI 153 (515)
T COG2812 94 DAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQA----FNALLKTL-------------EEPP--SHVKFI 153 (515)
T ss_pred HHHHCCCHHHHH-HHHHHHCCCCCCCCCEEEEEECHHHHHHHH----HHHHHCCC-------------CCCC--CCEEEE
T ss_conf 644454867999-999872468866664189983187643788----88875111-------------3686--674899
Q ss_pred EECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9348655-441311724799825878689998999860898998625781313228999999973177410234788879
Q gi|254780270|r 487 MTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERAL 565 (820)
Q Consensus 487 ~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i 565 (820)
T Consensus 154 lATTe~~Kip~TIlSRcq~f~fkri~~~~I~~---------~L~~i-~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslL 221 (515)
T COG2812 154 LATTEPQKIPNTILSRCQRFDFKRLDLEEIAK---------HLAAI-LDKEGINIEEDALSLIARA--AEGSLRDALSLL 221 (515)
T ss_pred EECCCCCCCCHHHHHCCCCCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 85388676840455212202225799999999---------99999-8744875479999999998--289745677789
Q ss_pred HHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 9998987654211785201279678675305200
Q gi|254780270|r 566 MKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 566 ~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
T Consensus 222 Dq~i~~~-------~---~~It~~~v~~~lG~~~ 245 (515)
T COG2812 222 DQAIAFG-------E---GEITLESVRDMLGLTD 245 (515)
T ss_pred HHHHHCC-------C---CCCCHHHHHHHHCCCC
T ss_conf 9999706-------7---7656999999968877