HHsearch alignment for GI: 254780270 and conserved domain: COG3480

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].
Probab=99.02  E-value=8.1e-10  Score=93.16  Aligned_cols=97  Identities=31%  Similarity=0.530  Sum_probs=84.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHH-------
Q ss_conf             88478887306899999999983688875--610663685030250006568999999970996998036775-------
Q gi|254780270|r  687 GATPKDGPSAGIAMATAIVSIMTCIPVYK--NVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENI-------  757 (820)
Q Consensus       687 Ga~pKDGPSAGi~i~tal~S~~~~~~v~~--~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~-------  757 (820)
T Consensus       230 ~~I--GGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~s  307 (342)
T COG3480         230 ENI--GGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDS  307 (342)
T ss_pred             CCC--CCCCHHHEEEHHHHHHCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHCCC
T ss_conf             447--997543335298886405311358669841113346883357454767767787659859984187620220138


Q ss_pred             --HHHHHCCHHHHCCCEEEECCCHHHHHHH
Q ss_conf             --5077614887709799981939998887
Q gi|254780270|r  758 --KDLMDIPENVKNGLEIIPVSFMGEVLKH  785 (820)
Q Consensus       758 --~d~~~ip~~~~~~l~~~~v~~~~evl~~  785 (820)
T Consensus       308 ny~~a~~~ak~l~t~mkivpv~T~q~aldy  337 (342)
T COG3480         308 NYDEALVAAEDLSTAMKIVPVKTLQEALDY  337 (342)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf             888889988754036247851000326667