HHsearch alignment for GI: 254780270 and conserved domain: COG3480
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].
Probab=99.02 E-value=8.1e-10 Score=93.16 Aligned_cols=97 Identities=31% Similarity=0.530 Sum_probs=84.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCEEEEEEEECCEEEEECCHHHHHHHHHHCCCCEEECCHHHH-------
Q ss_conf 88478887306899999999983688875--610663685030250006568999999970996998036775-------
Q gi|254780270|r 687 GATPKDGPSAGIAMATAIVSIMTCIPVYK--NVAMTGELTLRGRVLPIGGLKEKLLAALRAGVTKVLIPEENI------- 757 (820)
Q Consensus 687 Ga~pKDGPSAGi~i~tal~S~~~~~~v~~--~iAmTGEitl~G~VlpiGGi~eK~laA~raGi~~viiP~~N~------- 757 (820)
T Consensus 230 ~~I--GGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~s 307 (342)
T COG3480 230 ENI--GGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDS 307 (342)
T ss_pred CCC--CCCCHHHEEEHHHHHHCCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHCCC
T ss_conf 447--997543335298886405311358669841113346883357454767767787659859984187620220138
Q ss_pred --HHHHHCCHHHHCCCEEEECCCHHHHHHH
Q ss_conf --5077614887709799981939998887
Q gi|254780270|r 758 --KDLMDIPENVKNGLEIIPVSFMGEVLKH 785 (820)
Q Consensus 758 --~d~~~ip~~~~~~l~~~~v~~~~evl~~ 785 (820)
T Consensus 308 ny~~a~~~ak~l~t~mkivpv~T~q~aldy 337 (342)
T COG3480 308 NYDEALVAAEDLSTAMKIVPVKTLQEALDY 337 (342)
T ss_pred CHHHHHHHHHHHCCCCEEEEECHHHHHHHH
T ss_conf 888889988754036247851000326667