HHsearch alignment for GI: 254780270 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=97.04 E-value=0.0012 Score=46.54 Aligned_cols=104 Identities=27% Similarity=0.469 Sum_probs=59.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCC----C------CCCCCCCCCHHHHHHHHH-CCCCC
Q ss_conf 9986056565027999999770882---49986188888888356----3------200145671289999983-27887
Q gi|254780270|r 369 LCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRG----H------RRTYIGSMPGRIIQSLKR-AKRSN 434 (820)
Q Consensus 369 l~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~g----h------~~ty~ga~pg~ii~~l~~-~~~~n 434 (820)
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk-~~gmmmaIrsm~ 218 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK-AEGMMMAIRSMS 218 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHHCC
T ss_conf 6996599887077999999986315112677328997150043034358860323221010465617-888999999549
Q ss_pred E-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--C-C-CCHH
Q ss_conf 3-99993315542311771155665540600168133201035236442799993486--5-5-4413
Q gi|254780270|r 435 P-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--L-N-IPLP 497 (820)
Q Consensus 435 p-v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~-~-i~~~ 497 (820)
T Consensus 219 PEViIvDEIGt~------~d~~A~~ta~~~------------------GVkli~TaHG~~iedl~krp 262 (308)
T COG3854 219 PEVIIVDEIGTE------EDALAILTALHA------------------GVKLITTAHGNGIEDLIKRP 262 (308)
T ss_pred CCEEEEECCCCH------HHHHHHHHHHHC------------------CCEEEEEECCCCHHHHHCCH
T ss_conf 957998343647------779999999854------------------85899950441177765081