HHsearch alignment for GI: 254780270 and conserved domain: COG3854

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=97.04  E-value=0.0012  Score=46.54  Aligned_cols=104  Identities=27%  Similarity=0.469  Sum_probs=59.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCCCCHHHHCC----C------CCCCCCCCCHHHHHHHHH-CCCCC
Q ss_conf             9986056565027999999770882---49986188888888356----3------200145671289999983-27887
Q gi|254780270|r  369 LCFVGPPGVGKTSLAQSIAKATGRQ---YVRMSLGGVYDEADIRG----H------RRTYIGSMPGRIIQSLKR-AKRSN  434 (820)
Q Consensus       369 l~l~gppgvGKts~~~sia~al~r~---f~~islgg~~d~~~i~g----h------~~ty~ga~pg~ii~~l~~-~~~~n  434 (820)
T Consensus       140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk-~~gmmmaIrsm~  218 (308)
T COG3854         140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK-AEGMMMAIRSMS  218 (308)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHHCC
T ss_conf             6996599887077999999986315112677328997150043034358860323221010465617-888999999549


Q ss_pred             E-EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC--C-C-CCHH
Q ss_conf             3-99993315542311771155665540600168133201035236442799993486--5-5-4413
Q gi|254780270|r  435 P-LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT--L-N-IPLP  497 (820)
Q Consensus       435 p-v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~--~-~-i~~~  497 (820)
T Consensus       219 PEViIvDEIGt~------~d~~A~~ta~~~------------------GVkli~TaHG~~iedl~krp  262 (308)
T COG3854         219 PEVIIVDEIGTE------EDALAILTALHA------------------GVKLITTAHGNGIEDLIKRP  262 (308)
T ss_pred             CCEEEEECCCCH------HHHHHHHHHHHC------------------CCEEEEEECCCCHHHHHCCH
T ss_conf             957998343647------779999999854------------------85899950441177765081