HHsearch alignment for GI: 254780270 and conserved domain: KOG0479

>KOG0479 consensus.
Probab=94.64  E-value=0.051  Score=34.12  Aligned_cols=159  Identities=26%  Similarity=0.323  Sum_probs=94.2

Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHH-----CC-CCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCCC
Q ss_conf             987766520116899999999999984-----24-446735-9986056565027999999770882499861--88888
Q gi|254780270|r  334 IRILDQDHFGLEKVKERIIEYLAVQMR-----VI-KNKGLI-LCFVGPPGVGKTSLAQSIAKATGRQYVRMSL--GGVYD  404 (820)
Q Consensus       334 ~~iLd~~hyGl~~vK~rile~lav~~~-----~~-~~~g~i-l~l~gppgvGKts~~~sia~al~r~f~~isl--gg~~d  404 (820)
T Consensus       296 a~SLAPSI~GH~~vKkAillLL-lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGL  374 (818)
T KOG0479         296 ARSLAPSIYGHDYVKKAILLLL-LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGL  374 (818)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHH-HCCCEECCCCCCEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             6503762035799999999998-545012057886222520389846952789999999984154001036888777551


Q ss_pred             H-----HHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHH-------------------
Q ss_conf             8-----8835632001456712899999832788739999331554231177115566554-------------------
Q gi|254780270|r  405 E-----ADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEV-------------------  460 (820)
Q Consensus       405 ~-----~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allev-------------------  460 (820)
T Consensus       375 TAAVTtD~eTGERRLEAGAMV----------LADRGVVCIDEFDKMsDiDRv----AIHEVMEQqtVTIaKAGIHasLNA  440 (818)
T KOG0479         375 TAAVTTDQETGERRLEAGAMV----------LADRGVVCIDEFDKMSDIDRV----AIHEVMEQQTVTIAKAGIHASLNA  440 (818)
T ss_pred             EEEEEECCCCCHHHHHCCCEE----------ECCCCEEEEHHCCCCCCHHHH----HHHHHHHCCEEEEEECCCHHHHCC
T ss_conf             467741555313434238368----------705855873100222430378----999998605388671100020235


Q ss_pred             ------------------CCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-CCCHHH---CCCEEEEEECCCC
Q ss_conf             ------------------06001681332010352364427999934865-544131---1724799825878
Q gi|254780270|r  461 ------------------LDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL-NIPLPL---MDRMEIIRIAGYT  511 (820)
Q Consensus       461 ------------------ldp~qn~~f~d~y~~~~~dls~v~fi~tan~~-~i~~~l---~drme~i~~~~y~  511 (820)
T Consensus       441 RCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLL-SRFDL---lFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~  509 (818)
T KOG0479         441 RCSVLAAANPVYGQYDQSKTPMENIGLPDSLL-SRFDL---LFVVLDDIDADIDRMISEHVLRMHRYLTPGEE  509 (818)
T ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCCHHHH-HHHCE---EEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             11244313764434677788565158817777-54217---78872135505777889999988632688666