HHsearch alignment for GI: 254780270 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.72 E-value=1.3e-15 Score=137.13 Aligned_cols=224 Identities=21% Similarity=0.345 Sum_probs=151.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCC
Q ss_conf 6520116899999999999984244-------467359986056565027999999770882499861888888883563
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIK-------NKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGH 411 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~-------~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh 411 (820)
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~------s~l~s- 204 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG------SELVQ- 204 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEH------HHHHH-
T ss_conf 66149899999999999998659899997699999727868989997899999999874888799667------99752-
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHHHC-----CCCH--HHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 200145671289999983278873-99993315542311-----7711--556655406001681332010352364427
Q gi|254780270|r 412 RRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGSDL-----RGDP--SAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 412 ~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~~~-----~gdp--~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
T Consensus 205 --k~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~--emDG~~--------~~~~V 272 (390)
T PRK03992 205 --KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA--EMDGFD--------PRGNV 272 (390)
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--HCCCCC--------CCCCE
T ss_conf --454179999999999999709908971432566335677888620889999999999--744877--------77882
Q ss_pred EEEEECCCCC-CCHHHCC--CE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 9999348655-4413117--24-799825878689998999860898998625781313228999999973177410234
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMD--RM-EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVR 559 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~d--rm-e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR 559 (820)
T Consensus 273 ~VIaATNrpd~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~-----~~~~l~-~dvd--l~~lA~~T~G~S---G-- 339 (390)
T PRK03992 273 KIIAATNRPDILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHT-----RKMNLA-DDVD--LEELAELTEGAS---G-- 339 (390)
T ss_pred EEEEECCCCHHCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCCC-CCCC--HHHHHHHCCCCC---H--
T ss_conf 79960698100597775477652388708949999999999984-----799999-8889--999997687998---9--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC
Q ss_conf 7888799998987654211785201279678675305200
Q gi|254780270|r 560 SFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVPR 599 (820)
Q Consensus 560 ~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~~ 599 (820)
T Consensus 340 ---ADI~~lc~EA~m~Air~~r--~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 340 ---ADLKAICTEAGMFAIRDDR--TEVTMEDFLKAIEKVM 374 (390)
T ss_pred ---HHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHH
T ss_conf ---9999999999999998589--8608999999999996