HHsearch alignment for GI: 254780270 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=98.79 E-value=2.2e-07 Score=74.71 Aligned_cols=197 Identities=18% Similarity=0.260 Sum_probs=131.3
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 8424446735998605656502799999977088-------------249986188888888356320014567128999
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-------------QYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQ 425 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-------------~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~ 425 (820)
T Consensus 31 ~~~~~~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~d~as~~~v~~~r~-~~~ 109 (705)
T PRK05648 31 ALDNQRLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSVCREIDEGRFVDLIEVDAASRTKVEDTRE-LLD 109 (705)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH-HHH
T ss_conf 9970986304650078988898999999998677899988978776004666248977634451554478899999-998
Q ss_pred HHHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCE
Q ss_conf 9983--2788739999331554231177115566554060016813320103523644279999348655-441311724
Q gi|254780270|r 426 SLKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM 502 (820)
Q Consensus 426 ~l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drm 502 (820)
T Consensus 110 ~~~~~p~~~~~kv~~idevhmls~~~----fnallktle-------------epp--~~v~f~~att~~~k~p~t~~src 170 (705)
T PRK05648 110 NVQYAPTRGRYKVYLIDEVHMLSSHS----FNALLKTLE-------------EPP--PHVKFLLATTDPQKLPVTILSRC 170 (705)
T ss_pred HCCCCCCCCCEEEEEEEHHHHCCHHH----HHHHHHHCC-------------CCC--CCEEEEEECCCHHHCCHHHHHHH
T ss_conf 55517767745799984265417999----999987404-------------797--54599984287353758999766
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79982587868999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 503 EIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
T Consensus 171 ~~~~~~~~~~~~~~~---------~l~~-~~~~e~~~~~~~~~~~~~~~--~~g~~rd~ls~~dq~~~-------~~--- 228 (705)
T PRK05648 171 LQFSLKNMSPERVVE---------HLSH-VLGAENVPFEEDALWLLGRA--ADGSMRDAMSLTDQAIA-------FG--- 228 (705)
T ss_pred HHCCCCCCCHHHHHH---------HHHH-HHHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH-------CC---
T ss_conf 430236899999999---------9999-99975997789999999997--48967779999999986-------06---
Q ss_pred EECCCHHHHHHHHCC
Q ss_conf 012796786753052
Q gi|254780270|r 583 TVSINENNLQDYLGV 597 (820)
Q Consensus 583 ~~~i~~~~l~~~lg~ 597 (820)
T Consensus 229 ~~~~~~~~v~~mlg~ 243 (705)
T PRK05648 229 EGKVLAADVRAMLGT 243 (705)
T ss_pred CCCCCHHHHHHHHCC
T ss_conf 884079999998588