HHsearch alignment for GI: 254780270 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=98.22 E-value=4.7e-05 Score=57.07 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=81.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCC--CC-CCCCCCCC-H---------HHHHHHHHC
Q ss_conf 735998605656502799999977088249--986188888888356--32-00145671-2---------899999832
Q gi|254780270|r 366 GLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRG--HR-RTYIGSMP-G---------RIIQSLKRA 430 (820)
Q Consensus 366 g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~g--h~-~ty~ga~p-g---------~ii~~l~~~ 430 (820)
T Consensus 22 ~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~~~ 101 (328)
T PRK05707 22 AHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFVVQT 101 (328)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 20464479998679999999999984899999899988889999875899987998426667769799999999998317
Q ss_pred --CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEE
Q ss_conf --788739999331554231177115566554060016813320103523644279999348655-44131172479982
Q gi|254780270|r 431 --KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRI 507 (820)
Q Consensus 431 --~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~ 507 (820)
T Consensus 102 ~~~g~~KV~iI~~Ae~m~~~----AaNALLKtLE-------------EPp--~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 162 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRN----AANALLKSLE-------------EPS--GQTVLLLISHQPSRLLPTIKSRCQQLAC 162 (328)
T ss_pred CCCCCCEEEEEEHHHHHCHH----HHHHHHHHHH-------------CCC--CCEEEEEEECCHHHCHHHHHHCCEEEEC
T ss_conf 66789579995028773899----9999999850-------------789--8759998609934482588741413348
Q ss_pred CCCCHHHHHH
Q ss_conf 5878689998
Q gi|254780270|r 508 AGYTEEEKLQ 517 (820)
Q Consensus 508 ~~y~~~ek~~ 517 (820)
T Consensus 163 ~~p~~e~~~~ 172 (328)
T PRK05707 163 PLPSNEPSLQ 172 (328)
T ss_pred CCCCHHHHHH
T ss_conf 9989999999