HHsearch alignment for GI: 254780270 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=98.10 E-value=5.3e-05 Score=56.70 Aligned_cols=135 Identities=19% Similarity=0.284 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCCCCCHHH-HCC-CCCCC-CCC-CCHH--HHHHHHHC----
Q ss_conf 44467359986056565027999999770882-49986188888888-356-32001-456-7128--99999832----
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-YVRMSLGGVYDEAD-IRG-HRRTY-IGS-MPGR--IIQSLKRA---- 430 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r~-f~~islgg~~d~~~-i~g-h~~ty-~ga-~pg~--ii~~l~~~---- 430 (820)
T Consensus 21 ~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd~IR~l~~~~ 100 (319)
T PRK06090 21 AERIPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 69963067667999857999999999998089999998877877999875899982366123356768799999999997
Q ss_pred -----CCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf -----7887399993315542311771155665540-60016813320103523644279999348655-4413117247
Q gi|254780270|r 431 -----KRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 431 -----~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
T Consensus 101 ~~~~~~g~~KV~iI~~ae~m~~----~AaNALLKtLEEPp----------------~~t~fiL~t~~~~~ll~TI~SRCq 160 (319)
T PRK06090 101 QESSQLGGYRLFVIEPADAMNE----SASNALLKTLEEPA----------------PNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred HHCCCCCCCEEEEECCHHHCCH----HHHHHHHHHHCCCC----------------CCEEEEEEECCHHHCCCCHHHCCC
T ss_conf 5452106936999814443499----99999999842899----------------883899876851208641876144
Q ss_pred EEEECCCCHHHHH
Q ss_conf 9982587868999
Q gi|254780270|r 504 IIRIAGYTEEEKL 516 (820)
Q Consensus 504 ~i~~~~y~~~ek~ 516 (820)
T Consensus 161 ~~~l~~p~~~~~~ 173 (319)
T PRK06090 161 QWVVTPPSTDQAM 173 (319)
T ss_pred CCCCCCCCHHHHH
T ss_conf 5028995999999