HHsearch alignment for GI: 254780270 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.37 E-value=1.9e-11 Score=105.56 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=140.6
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-------------EEEECCCCCCH
Q ss_conf 65201168999999999999842444673599860565650279999997708824-------------99861888888
Q gi|254780270|r 339 QDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY-------------VRMSLGGVYDE 405 (820)
Q Consensus 339 ~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f-------------~~islgg~~d~ 405 (820)
T Consensus 16 ~dvvGQe~vv~~L~na-----i~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~Dv 90 (560)
T PRK06647 16 NSLEGQDFVVETLKHS-----IEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDV 90 (560)
T ss_pred HHHCCCHHHHHHHHHH-----HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 4403949999999999-----97499774366328998789999999999965999999888878878888745999875
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHC--CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 8835632001456712899999832--78873999933155423117711556655406001681332010352364427
Q gi|254780270|r 406 ADIRGHRRTYIGSMPGRIIQSLKRA--KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDV 483 (820)
Q Consensus 406 ~~i~gh~~ty~ga~pg~ii~~l~~~--~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v 483 (820)
T Consensus 91 iEidaasn~~VddIR-~l~e~v~~~P~~~~yKV~IIDEahmLt~~----A~NALLKtLE-------------EPP--~~~ 150 (560)
T PRK06647 91 IEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNS----AFNALLKTIE-------------EPP--PYI 150 (560)
T ss_pred EEECCCCCCCHHHHH-HHHHHHCCCCCCCCEEEEEECCHHHCCHH----HHHHHHHHHH-------------CCC--CCE
T ss_conf 764364548889999-99998632876687069996465655999----9999999863-------------488--755
Q ss_pred EEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999348655-441311724799825878689998999860898998625781313228999999973177410234788
Q gi|254780270|r 484 MFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFE 562 (820)
Q Consensus 484 ~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~ 562 (820)
T Consensus 151 ~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~~~-----L~~I~-----~~E~i~~e~~AL~lIa~~--a~Gs~RDal 218 (560)
T PRK06647 151 VFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYEM-----LKKVC-----LEDDIKYEDEALKWIAYK--SGGSVRDAY 218 (560)
T ss_pred EEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHHHH-----HHHHH-----HHCCCCCCHHHHHHHHHH--CCCCHHHHH
T ss_conf 999977994768489996510410555999999999-----99999-----867988799999999997--789588899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 879999898765421178520127967867530520
Q gi|254780270|r 563 RALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 563 r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
T Consensus 219 slldq~i~~~----------~~~i~~~~v~~~lG~~ 244 (560)
T PRK06647 219 TLFDQIVSFS----------NSDITLEQIRSKMGLT 244 (560)
T ss_pred HHHHHHHHCC----------CCCCCHHHHHHHHCCC
T ss_conf 9999999607----------9977899999986898