HHsearch alignment for GI: 254780270 and conserved domain: PRK06893

>PRK06893 DNA replication initiation factor; Validated.
Probab=98.85  E-value=5.1e-07  Score=71.96  Aligned_cols=187  Identities=17%  Similarity=0.290  Sum_probs=125.5

Q ss_pred             HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             9842444673599860565650279999997---7088249986188888888356320014567128999998327887
Q gi|254780270|r  358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN  434 (820)
Q Consensus       358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n  434 (820)
T Consensus        31 ~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------------~~~~~l~~l~~~----   92 (229)
T PRK06893         31 RKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------------FSPAVLENLEQQ----   92 (229)
T ss_pred             HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------------CCHHHHHHHHHC----
T ss_conf             97550246987999899999889999999999997189859997377564--------------069999876547----


Q ss_pred             EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEEE
Q ss_conf             399993315542311771155665540600168133201035236442799993486----5544-131172---47998
Q gi|254780270|r  435 PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEIIR  506 (820)
Q Consensus       435 pv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i~  506 (820)
T Consensus        93 d~l~iDDi~~i~g~~--~~e~~lF~l~N~l-------------~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~  157 (229)
T PRK06893         93 DLVCLDDLQAVIGNE--EWELAIFDLFNRI-------------KESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQ  157 (229)
T ss_pred             CEEEEECHHHHCCCH--HHHHHHHHHHHHH-------------HHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEE
T ss_conf             979996723424883--8999999999999-------------9759917998579883322100267999996883699


Q ss_pred             ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf             25878689998999860898998625781313228999999973177410234788879999898765421178520127
Q gi|254780270|r  507 IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSI  586 (820)
Q Consensus       507 ~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i  586 (820)
T Consensus       158 i~~~dd~~~~~iL~~~a-----~-----~rgl~l~~~v~~yl~~r~~R~--~~~l~~~l~~Ld~~sl~-------~kr~i  218 (229)
T PRK06893        158 LNDLTDEQKIEVLQRNA-----Y-----QRGIELSDETANFLLKRLDRD--MHTLFDALDLLDKASLQ-------AQRKL  218 (229)
T ss_pred             ECCCCHHHHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH-------HCCCC
T ss_conf             66777579999999999-----9-----649999989999999983478--99999999999999998-------08999


Q ss_pred             CHHHHHHHHC
Q ss_conf             9678675305
Q gi|254780270|r  587 NENNLQDYLG  596 (820)
Q Consensus       587 ~~~~l~~~lg  596 (820)
T Consensus       219 TiplvkevL~  228 (229)
T PRK06893        219 TIPFVKEILG  228 (229)
T ss_pred             CHHHHHHHHC
T ss_conf             9999999868