HHsearch alignment for GI: 254780270 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.85 E-value=5.1e-07 Score=71.96 Aligned_cols=187 Identities=17% Similarity=0.290 Sum_probs=125.5
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 9842444673599860565650279999997---7088249986188888888356320014567128999998327887
Q gi|254780270|r 358 QMRVIKNKGLILCFVGPPGVGKTSLAQSIAK---ATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSN 434 (820)
Q Consensus 358 ~~~~~~~~g~il~l~gppgvGKts~~~sia~---al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~n 434 (820)
T Consensus 31 ~~~~~~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~--------------~~~~~l~~l~~~---- 92 (229)
T PRK06893 31 RKNFIDLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------------FSPAVLENLEQQ---- 92 (229)
T ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHH--------------CCHHHHHHHHHC----
T ss_conf 97550246987999899999889999999999997189859997377564--------------069999876547----
Q ss_pred EEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCC----CCCC-HHHCCC---EEEEE
Q ss_conf 399993315542311771155665540600168133201035236442799993486----5544-131172---47998
Q gi|254780270|r 435 PLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANT----LNIP-LPLMDR---MEIIR 506 (820)
Q Consensus 435 pv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~----~~i~-~~l~dr---me~i~ 506 (820)
T Consensus 93 d~l~iDDi~~i~g~~--~~e~~lF~l~N~l-------------~~~~~~~ll~ss~~~p~~l~~~l~DL~SRl~~~~~~~ 157 (229)
T PRK06893 93 DLVCLDDLQAVIGNE--EWELAIFDLFNRI-------------KESGKTLLLISANQSPHALQIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred CEEEEECHHHHCCCH--HHHHHHHHHHHHH-------------HHCCCCEEEEECCCCHHHHCCHHHHHHHHHHCCEEEE
T ss_conf 979996723424883--8999999999999-------------9759917998579883322100267999996883699
Q ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 25878689998999860898998625781313228999999973177410234788879999898765421178520127
Q gi|254780270|r 507 IAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSI 586 (820)
Q Consensus 507 ~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i 586 (820)
T Consensus 158 i~~~dd~~~~~iL~~~a-----~-----~rgl~l~~~v~~yl~~r~~R~--~~~l~~~l~~Ld~~sl~-------~kr~i 218 (229)
T PRK06893 158 LNDLTDEQKIEVLQRNA-----Y-----QRGIELSDETANFLLKRLDRD--MHTLFDALDLLDKASLQ-------AQRKL 218 (229)
T ss_pred ECCCCHHHHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH-------HCCCC
T ss_conf 66777579999999999-----9-----649999989999999983478--99999999999999998-------08999
Q ss_pred CHHHHHHHHC
Q ss_conf 9678675305
Q gi|254780270|r 587 NENNLQDYLG 596 (820)
Q Consensus 587 ~~~~l~~~lg 596 (820)
T Consensus 219 TiplvkevL~ 228 (229)
T PRK06893 219 TIPFVKEILG 228 (229)
T ss_pred CHHHHHHHHC
T ss_conf 9999999868