HHsearch alignment for GI: 254780270 and conserved domain: PRK07993
>PRK07993 DNA polymerase III subunit delta'; Validated.
Probab=97.67 E-value=0.00018 Score=52.75 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCC--CCC-CCCCCCCHH--H-HHHHHH---
Q ss_conf 24446735998605656502799999977088249--986188888888356--320-014567128--9-999983---
Q gi|254780270|r 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRG--HRR-TYIGSMPGR--I-IQSLKR--- 429 (820)
Q Consensus 361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~g--h~~-ty~ga~pg~--i-i~~l~~--- 429 (820)
T Consensus 19 ~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~ 98 (334)
T PRK07993 19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTE 98 (334)
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 85981046754799998899999999999818999999999999789998668999847753422345599999999999
Q ss_pred ------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCE
Q ss_conf ------2788739999331554231177115566554060016813320103523644279999348655-441311724
Q gi|254780270|r 430 ------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM 502 (820)
Q Consensus 430 ------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drm 502 (820)
T Consensus 99 ~~~~~~~~g~~kV~iI~~Ae~mn~~----AaNaLLKtLE-------------EPp--~~t~~iL~t~~~~~lLpTI~SRC 159 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA----AANALLKTLE-------------EPP--EKTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred HHHHCCCCCCCEEEEECCHHHHCHH----HHHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCCHHHHHC
T ss_conf 9843665699479997667775999----9999998612-------------799--88499986698565723887523
Q ss_pred EEEEECCCCHHHHHHH
Q ss_conf 7998258786899989
Q gi|254780270|r 503 EIIRIAGYTEEEKLQI 518 (820)
Q Consensus 503 e~i~~~~y~~~ek~~i 518 (820)
T Consensus 160 q~~~~~~~~~~~~~~w 175 (334)
T PRK07993 160 RLHYLAPPPEQYALTW 175 (334)
T ss_pred CCCCCCCCCHHHHHHH
T ss_conf 0415899799999999