HHsearch alignment for GI: 254780270 and conserved domain: PRK07993

>PRK07993 DNA polymerase III subunit delta'; Validated.
Probab=97.67  E-value=0.00018  Score=52.75  Aligned_cols=139  Identities=15%  Similarity=0.180  Sum_probs=86.6

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEECCCCCCHHHHCC--CCC-CCCCCCCHH--H-HHHHHH---
Q ss_conf             24446735998605656502799999977088249--986188888888356--320-014567128--9-999983---
Q gi|254780270|r  361 VIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYV--RMSLGGVYDEADIRG--HRR-TYIGSMPGR--I-IQSLKR---  429 (820)
Q Consensus       361 ~~~~~g~il~l~gppgvGKts~~~sia~al~r~f~--~islgg~~d~~~i~g--h~~-ty~ga~pg~--i-i~~l~~---  429 (820)
T Consensus        19 ~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~~C~l~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~   98 (334)
T PRK07993         19 QAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTE   98 (334)
T ss_pred             HCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             85981046754799998899999999999818999999999999789998668999847753422345599999999999


Q ss_pred             ------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCE
Q ss_conf             ------2788739999331554231177115566554060016813320103523644279999348655-441311724
Q gi|254780270|r  430 ------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRM  502 (820)
Q Consensus       430 ------~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drm  502 (820)
T Consensus        99 ~~~~~~~~g~~kV~iI~~Ae~mn~~----AaNaLLKtLE-------------EPp--~~t~~iL~t~~~~~lLpTI~SRC  159 (334)
T PRK07993         99 KLYEHARLGGAKVVWLPDAALLTDA----AANALLKTLE-------------EPP--EKTWFFLACREPARLLATLRSRC  159 (334)
T ss_pred             HHHHCCCCCCCEEEEECCHHHHCHH----HHHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCCHHHHHC
T ss_conf             9843665699479997667775999----9999998612-------------799--88499986698565723887523


Q ss_pred             EEEEECCCCHHHHHHH
Q ss_conf             7998258786899989
Q gi|254780270|r  503 EIIRIAGYTEEEKLQI  518 (820)
Q Consensus       503 e~i~~~~y~~~ek~~i  518 (820)
T Consensus       160 q~~~~~~~~~~~~~~w  175 (334)
T PRK07993        160 RLHYLAPPPEQYALTW  175 (334)
T ss_pred             CCCCCCCCCHHHHHHH
T ss_conf             0415899799999999