HHsearch alignment for GI: 254780270 and conserved domain: PRK08116
>PRK08116 hypothetical protein; Validated.
Probab=98.06 E-value=7.5e-05 Score=55.58 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCC---C
Q ss_conf 9999999999998424-446735998605656502799999977088---24998618888888835632001456---7
Q gi|254780270|r 347 VKERIIEYLAVQMRVI-KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGS---M 419 (820)
Q Consensus 347 vK~rile~lav~~~~~-~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga---~ 419 (820)
T Consensus 90 a~~~a~~Y~--~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~-----ll~~lk~~~~~~~~~~ 162 (262)
T PRK08116 90 AYKVAVKYV--KKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPE-----LLNRIKSTYNSEGKED 162 (262)
T ss_pred HHHHHHHHH--HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHHHCCCCHH
T ss_conf 999999999--989873646861899898999899999999999998799399988999-----9999999986356101
Q ss_pred CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 12899999832788739999331554231177115566554060
Q gi|254780270|r 420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP 463 (820)
Q Consensus 420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp 463 (820)
T Consensus 163 ~~e~l~~l~~----~dLLIiDDlG~e~~t~--w~~e~lf~IIn~ 200 (262)
T PRK08116 163 ENEIIRALDN----ADLLILDDLGAEKDTE--WVREKLYNIIDS 200 (262)
T ss_pred HHHHHHHHHC----CCEEEEEHHCCCCCCH--HHHHHHHHHHHH
T ss_conf 9999998612----9989983221456987--899999999999