HHsearch alignment for GI: 254780270 and conserved domain: PRK08116

>PRK08116 hypothetical protein; Validated.
Probab=98.06  E-value=7.5e-05  Score=55.58  Aligned_cols=104  Identities=24%  Similarity=0.298  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHCCCCCCCCCC---C
Q ss_conf             9999999999998424-446735998605656502799999977088---24998618888888835632001456---7
Q gi|254780270|r  347 VKERIIEYLAVQMRVI-KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYDEADIRGHRRTYIGS---M  419 (820)
Q Consensus       347 vK~rile~lav~~~~~-~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d~~~i~gh~~ty~ga---~  419 (820)
T Consensus        90 a~~~a~~Y~--~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~-----ll~~lk~~~~~~~~~~  162 (262)
T PRK08116         90 AYKVAVKYV--KKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPE-----LLNRIKSTYNSEGKED  162 (262)
T ss_pred             HHHHHHHHH--HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHHHCCCCHH
T ss_conf             999999999--989873646861899898999899999999999998799399988999-----9999999986356101


Q ss_pred             CHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf             12899999832788739999331554231177115566554060
Q gi|254780270|r  420 PGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDP  463 (820)
Q Consensus       420 pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp  463 (820)
T Consensus       163 ~~e~l~~l~~----~dLLIiDDlG~e~~t~--w~~e~lf~IIn~  200 (262)
T PRK08116        163 ENEIIRALDN----ADLLILDDLGAEKDTE--WVREKLYNIIDS  200 (262)
T ss_pred             HHHHHHHHHC----CCEEEEEHHCCCCCCH--HHHHHHHHHHHH
T ss_conf             9999998612----9989983221456987--899999999999