HHsearch alignment for GI: 254780270 and conserved domain: PRK08699

>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=97.90  E-value=7.8e-05  Score=55.45  Aligned_cols=134  Identities=22%  Similarity=0.331  Sum_probs=86.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EE-EEECCCCCCHHHH-C-CCCCC-CCCC-----CCHH-----HHHHH
Q ss_conf             467359986056565027999999770882--49-9861888888883-5-63200-1456-----7128-----99999
Q gi|254780270|r  364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ--YV-RMSLGGVYDEADI-R-GHRRT-YIGS-----MPGR-----IIQSL  427 (820)
Q Consensus       364 ~~g~il~l~gppgvGKts~~~sia~al~r~--f~-~islgg~~d~~~i-~-gh~~t-y~ga-----~pg~-----ii~~l  427 (820)
T Consensus        19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idqi   98 (325)
T PRK08699         19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDAV   98 (325)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf             50117975799997899999999999828999888998988888999865999996885134453001665566769999


Q ss_pred             HH---------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCH
Q ss_conf             83---------27887399993315542311771155665540-60016813320103523644279999348655-441
Q gi|254780270|r  428 KR---------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPL  496 (820)
Q Consensus       428 ~~---------~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~  496 (820)
T Consensus        99 R~l~~~~~~~~~~~~~kV~ii~~ae~mn~----~aaNaLLK~LEEPp----------------~~~~fiL~t~~~~~llp  158 (325)
T PRK08699         99 REIIDNVYLTSVRGGLRVILIHPAESMNV----QAANSLLKVLEEPP----------------PQVVFLLVSHAADKVLP  158 (325)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHCCCC----------------CCEEEEEEECCHHHCCC
T ss_conf             99999971086568946999857777589----99999999841788----------------88489998798464623


Q ss_pred             HHCCCEEEEEECCCCHHHHHH
Q ss_conf             311724799825878689998
Q gi|254780270|r  497 PLMDRMEIIRIAGYTEEEKLQ  517 (820)
Q Consensus       497 ~l~drme~i~~~~y~~~ek~~  517 (820)
T Consensus       159 TI~SRc~~~~~~~p~~~~~~~  179 (325)
T PRK08699        159 TIKSRCRKMVLPAPSHEEALA  179 (325)
T ss_pred             HHHHCCCCCCCCCCCHHHHHH
T ss_conf             398645421089959999999