HHsearch alignment for GI: 254780270 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=97.90 E-value=7.8e-05 Score=55.45 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--EE-EEECCCCCCHHHH-C-CCCCC-CCCC-----CCHH-----HHHHH
Q ss_conf 467359986056565027999999770882--49-9861888888883-5-63200-1456-----7128-----99999
Q gi|254780270|r 364 NKGLILCFVGPPGVGKTSLAQSIAKATGRQ--YV-RMSLGGVYDEADI-R-GHRRT-YIGS-----MPGR-----IIQSL 427 (820)
Q Consensus 364 ~~g~il~l~gppgvGKts~~~sia~al~r~--f~-~islgg~~d~~~i-~-gh~~t-y~ga-----~pg~-----ii~~l 427 (820)
T Consensus 19 rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idqi 98 (325)
T PRK08699 19 RRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDAV 98 (325)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 50117975799997899999999999828999888998988888999865999996885134453001665566769999
Q ss_pred HH---------CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCH
Q ss_conf 83---------27887399993315542311771155665540-60016813320103523644279999348655-441
Q gi|254780270|r 428 KR---------AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPL 496 (820)
Q Consensus 428 ~~---------~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~ 496 (820)
T Consensus 99 R~l~~~~~~~~~~~~~kV~ii~~ae~mn~----~aaNaLLK~LEEPp----------------~~~~fiL~t~~~~~llp 158 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNV----QAANSLLKVLEEPP----------------PQVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCHHHHCH----HHHHHHHHHHCCCC----------------CCEEEEEEECCHHHCCC
T ss_conf 99999971086568946999857777589----99999999841788----------------88489998798464623
Q ss_pred HHCCCEEEEEECCCCHHHHHH
Q ss_conf 311724799825878689998
Q gi|254780270|r 497 PLMDRMEIIRIAGYTEEEKLQ 517 (820)
Q Consensus 497 ~l~drme~i~~~~y~~~ek~~ 517 (820)
T Consensus 159 TI~SRc~~~~~~~p~~~~~~~ 179 (325)
T PRK08699 159 TIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHCCCCCCCCCCCHHHHHH
T ss_conf 398645421089959999999