HHsearch alignment for GI: 254780270 and conserved domain: PRK08727
>PRK08727 hypothetical protein; Validated.
Probab=98.53 E-value=1.2e-05 Score=61.71 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=114.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHH---HHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 4467359986056565027999999---7708824998618888888835632001456712899999832788739999
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIA---KATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLL 439 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia---~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~l 439 (820)
T Consensus 38 ~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~l~~~~~-------------~~~~-~l~~l----e~~~ll~i 99 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGRSSAYLPLQAAAG-------------RLRD-ALEAL----EGRSLVAL 99 (233)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH-------------HHHH-HHHHH----CCCCEEEE
T ss_conf 888898999899999889999999999982799728844788532-------------0256-77531----03897898
Q ss_pred ECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC----CCCHH-HCCC---EEEEEECCCC
Q ss_conf 33155423117711556655406001681332010352364427999934865----54413-1172---4799825878
Q gi|254780270|r 440 DEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL----NIPLP-LMDR---MEIIRIAGYT 511 (820)
Q Consensus 440 deidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~----~i~~~-l~dr---me~i~~~~y~ 511 (820)
T Consensus 100 DDid~i~g~~--~~e~aLFhL~N~~-------------~~-~~~~ll~ts~~~P~~l~~~l~DL~SRL~~~~~~~l~~~d 163 (233)
T PRK08727 100 DGVDSIAGQR--EDEVALFDFHNRA-------------RA-AGITLLYTARQMPDGLALVLPDLRSRLSQCIRIGLPVLD 163 (233)
T ss_pred ECCHHCCCCH--HHHHHHHHHHHHH-------------HH-CCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCC
T ss_conf 5501126982--7999999999999-------------86-198389977989566231002199999669228857889
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 68999899986089899862578131322899999997317741023478887999989876542117852012796786
Q gi|254780270|r 512 EEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTTVSINENNL 591 (820)
Q Consensus 512 ~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l 591 (820)
T Consensus 164 D~~~~~iL~~~a-----~-----~rgl~l~~~V~~Yll~r~~R~--~~~l~~~l~~LD~~SL~~-------kr~iTip~v 224 (233)
T PRK08727 164 DVARAAVLRDRA-----Q-----RRGLALDEAAIDWLLTHGERE--LAGLVALLDRLDRESLAA-------KRRITVPFL 224 (233)
T ss_pred HHHHHHHHHHHH-----H-----HCCCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHC-------CCCCCHHHH
T ss_conf 799999999999-----9-----869999989999999856889--999999999999999980-------898889999
Q ss_pred HHHHC
Q ss_conf 75305
Q gi|254780270|r 592 QDYLG 596 (820)
Q Consensus 592 ~~~lg 596 (820)
T Consensus 225 k~vL~ 229 (233)
T PRK08727 225 RRVLE 229 (233)
T ss_pred HHHHH
T ss_conf 99997