HHsearch alignment for GI: 254780270 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=98.60 E-value=8e-07 Score=70.49 Aligned_cols=197 Identities=18% Similarity=0.265 Sum_probs=129.1
Q ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-------------EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 4244467359986056565027999999770882-------------499861888888883563200145671289999
Q gi|254780270|r 360 RVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQ-------------YVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQS 426 (820)
Q Consensus 360 ~~~~~~g~il~l~gppgvGKts~~~sia~al~r~-------------f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~ 426 (820)
T Consensus 32 ~~~~~~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~-~~~~ 110 (663)
T PRK08770 32 LDSGRVHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVRE-VIEN 110 (663)
T ss_pred HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHH-HHHH
T ss_conf 970997404762279988888999999998678999999978778778988548988658864676588899999-9984
Q ss_pred HHH--CCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEE
Q ss_conf 983--2788739999331554231177115566554060016813320103523644279999348655-4413117247
Q gi|254780270|r 427 LKR--AKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRME 503 (820)
Q Consensus 427 l~~--~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme 503 (820)
T Consensus 111 ~~~~p~~~~~kvy~idevhmls~~~----fna~lktle-------------epp--~~v~f~~att~~~k~p~t~~src~ 171 (663)
T PRK08770 111 AQYMPSRGKFKVYLIDEVHMLSKAA----FNALLKTLE-------------EPP--EHVKFLLATTDPQKLPVTVLSRCL 171 (663)
T ss_pred CCCCCCCCCEEEEEEECHHHCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHHCCHHHHHHHH
T ss_conf 4358877743699970043328999----999987402-------------786--442899854873337489998887
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99825878689998999860898998625781313228999999973177410234788879999898765421178520
Q gi|254780270|r 504 IIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDTT 583 (820)
Q Consensus 504 ~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~~ 583 (820)
T Consensus 172 ~f~~~~~~~~~~~~---------~l~~-~~~~e~~~~~~~~~~~~~~~--~~gs~rd~lsl~~q~~~-----~--~---~ 229 (663)
T PRK08770 172 QFNLKRLDEDQIQG---------QMTR-ILAAEQIESDPSAIVQLSKA--ADGSLRDGLSLLDQAIA-----Y--A---G 229 (663)
T ss_pred HCCCCCCCHHHHHH---------HHHH-HHHHCCCCCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH-----H--C---C
T ss_conf 63437799999999---------9999-99983997699999999997--47856778889999998-----6--6---8
Q ss_pred ECCCHHHHHHHHCCC
Q ss_conf 127967867530520
Q gi|254780270|r 584 VSINENNLQDYLGVP 598 (820)
Q Consensus 584 ~~i~~~~l~~~lg~~ 598 (820)
T Consensus 230 ~~~~~~~v~~mlg~~ 244 (663)
T PRK08770 230 GALREDVVRTMLGTV 244 (663)
T ss_pred CCCCHHHHHHHHCCC
T ss_conf 976899999984888