HHsearch alignment for GI: 254780270 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=98.89 E-value=1.8e-08 Score=82.98 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=111.8
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCHHHHCCC----C
Q ss_conf 6652011689999999999998424446735998605656502799999977088-2499861888888883563----2
Q gi|254780270|r 338 DQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-QYVRMSLGGVYDEADIRGH----R 412 (820)
Q Consensus 338 d~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-~f~~islgg~~d~~~i~gh----~ 412 (820)
T Consensus 22 ~~~liGq~~~~~~L~~a~~-----~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~---pd~~~~~~r 93 (352)
T PRK09112 22 NNRLFGHEEARAFLAQAYR-----EGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLAD---PDPASPLWR 93 (352)
T ss_pred HHHHCCHHHHHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCCHHHH
T ss_conf 6462786999999999998-----49965246535899808999999999998669986668655678---887877899
Q ss_pred CCCCCCCCH-------------H----H----HHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCC-CC
Q ss_conf 001456712-------------8----9----9999832------78873999933155423117711556655406-00
Q gi|254780270|r 413 RTYIGSMPG-------------R----I----IQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLD-PA 464 (820)
Q Consensus 413 ~ty~ga~pg-------------~----i----i~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevld-p~ 464 (820)
T Consensus 94 ~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~----aaNALLK~LEEPp 169 (352)
T PRK09112 94 QIAQGAHPNLLHLTRPFDEKTGKFKTAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDMNRN----AANAILKTLEEPP 169 (352)
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH----HHHHHHHHHHCCC
T ss_conf 997489999565534322021454335777999999998454886688069998187874699----9999999853489
Q ss_pred CCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 16813320103523644279999348655-44131172479982587868999899986089899862578131322899
Q gi|254780270|r 465 QNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDG 543 (820)
Q Consensus 465 qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~ 543 (820)
T Consensus 170 ----------------~~~~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~di~~~L---------~~i~~~~-~~-~~~~ 222 (352)
T PRK09112 170 ----------------ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKAL---------SHLGSKQ-GI-SAGE 222 (352)
T ss_pred ----------------CCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHCC-CC-CCHH
T ss_conf ----------------8748998869977776899974332148893989999999---------9875126-89-9879
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999997317741023478887
Q gi|254780270|r 544 VLLDIIRLFTHEAGVRSFERA 564 (820)
Q Consensus 544 ~i~~ii~~Yt~EaGvR~l~r~ 564 (820)
T Consensus 223 ~~~~l~~~--a~GS~~~Al~L 241 (352)
T PRK09112 223 ETEALLQR--SEGSVRKALLL 241 (352)
T ss_pred HHHHHHHH--HCCCHHHHHHH
T ss_conf 99999987--08998899987