HHsearch alignment for GI: 254780270 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=99.29 E-value=8.1e-10 Score=93.17 Aligned_cols=225 Identities=25% Similarity=0.341 Sum_probs=105.4
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC----------------------------
Q ss_conf 5201168999999999999842444673599860565650279999997708----------------------------
Q gi|254780270|r 340 DHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATG---------------------------- 391 (820)
Q Consensus 340 ~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~---------------------------- 391 (820)
T Consensus 192 dv~Gq~~ak-raleIAAA-------GgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~ 263 (506)
T PRK09862 192 DVVGQEQGK-RGLEITAA-------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred HHCCCHHHH-HHHHHHHC-------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 536979999-99999744-------6886598769994598999775123899898999999999987189877775466
Q ss_pred CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHC-CCCCCCCEE
Q ss_conf 8249986188888888356320014567128999998327887399993315542311771155665540-600168133
Q gi|254780270|r 392 RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVL-DPAQNSSFV 470 (820)
Q Consensus 392 r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevl-dp~qn~~f~ 470 (820)
T Consensus 264 rPf-R~PHHs~S~~aliGGG~----~~~PGEISLA------H~GVLFLDElpEF~r--------~vLe~LRqPLE~g~I~ 324 (506)
T PRK09862 264 RPF-RSPHHSASLTAMVGGGA----IPGPGEISLA------HNGVLFLDELPEFER--------RTLDALREPIESGQIH 324 (506)
T ss_pred CCE-ECCCCCCCHHHHHCCCC----CCCCCCEEEC------CCCEEEECCHHCCCH--------HHHHHHHHHHCCCEEE
T ss_conf 850-37887654766637999----9999722213------575788455000688--------8999877622477599
Q ss_pred ----EEECCCCCCCCCEEE-----------------EEECC----CCC-CCHHHCCCEEE-EEECC--C-----------
Q ss_conf ----201035236442799-----------------99348----655-44131172479-98258--7-----------
Q gi|254780270|r 471 ----DHYLEVEYDLSDVMF-----------------IMTAN----TLN-IPLPLMDRMEI-IRIAG--Y----------- 510 (820)
Q Consensus 471 ----d~y~~~~~dls~v~f-----------------i~tan----~~~-i~~~l~drme~-i~~~~--y----------- 510 (820)
T Consensus 325 IsRa~~~~~~PA~---F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~~~~l~~~~~~~e 401 (506)
T PRK09862 325 LSRTRAKITYPAR---FQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGE 401 (506)
T ss_pred EEECCCEEEECCH---HHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCCHHHHHCCCCCCC
T ss_conf 9966867986153---3111103788888899997778989999998656622130364799816899666632489898
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHC-CC----CCCCCCCHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---8689998999860898998625-78----13132289999999731774-102347888799998987654211785
Q gi|254780270|r 511 ---TEEEKLQIAKNHLVKKVLTEHA-LK----QEECCISDGVLLDIIRLFTH-EAGVRSFERALMKIARKAVTKIVKNSD 581 (820)
Q Consensus 511 ---~~~ek~~i~~~~l~p~~~~~~~-~~----~~~~~~~~~~i~~ii~~Yt~-EaGvR~l~r~i~~i~r~~~~~~~~~~~ 581 (820)
T Consensus 402 sS~~ir~rV~~Ar~~q~~R~~~~Na~l~~~~l~~~~~l~~~~~~~L~~a~~~~~lS~R~~~riL-----rvARTIADL~g 476 (506)
T PRK09862 402 SSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLL-----KVARTIADIDQ 476 (506)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHCC
T ss_conf 8899999999999999985516565799899976549997899999999996595799999999-----99999985559
Q ss_pred CEECCCHHHHHHHHCCCCC
Q ss_conf 2012796786753052000
Q gi|254780270|r 582 TTVSINENNLQDYLGVPRY 600 (820)
Q Consensus 582 ~~~~i~~~~l~~~lg~~~~ 600 (820)
T Consensus 477 -~~~i~~~Hi~eAl~yR~~ 494 (506)
T PRK09862 477 -SDIITRQHLQEAVSYRAI 494 (506)
T ss_pred -CCCCCHHHHHHHHHHHHH
T ss_conf -999998999999971767