HHsearch alignment for GI: 254780270 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=99.05 E-value=2.3e-08 Score=82.23 Aligned_cols=184 Identities=21% Similarity=0.322 Sum_probs=126.1
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 4446735998605656502799999977088---249986188888---8883563200145671289999983278873
Q gi|254780270|r 362 IKNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRTYIGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 362 ~~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~ty~ga~pg~ii~~l~~~~~~np 435 (820)
T Consensus 224 A~~d~pVL-I~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG~a---~~~~~G~fe~------A~gG 293 (513)
T PRK10820 224 AMLSAPLL-ITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFGHA---PEGKKGFFEQ------ANGG 293 (513)
T ss_pred HCCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCC---CCCCCCCEEE------CCCC
T ss_conf 59899889-989898249999999996688789982688899899678999863876---6688975578------5898
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECCC-C-C------CCHHHCCCEEEE
Q ss_conf 99993315542311771155665540600168133201--035236442799993486-5-5------441311724799
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTANT-L-N------IPLPLMDRMEII 505 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan~-~-~------i~~~l~drme~i 505 (820)
T Consensus 294 TLfLdEI~~l~~~~Q----~kLLr~Lq---~~~~~rvG~~~~~~~---dvRiIaaT~~dL~~lv~~g~FReDLyyRL~v~ 363 (513)
T PRK10820 294 SVLLDEIGEMSPRMQ----AKLLRFLN---DGTFRRVGEDHEVHV---DVRVICATQKNLVELVQKGLFREDLYYRLNVL 363 (513)
T ss_pred EEEEECHHHCCHHHH----HHHHHHHH---CCEEEECCCCCEEEE---EEEEEECCCHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 899978365999999----99999986---897996599853567---78999626530999987298508899986167
Q ss_pred E--ECCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 8--258786-89998999860898998625781313228999999973177410234788879999
Q gi|254780270|r 506 R--IAGYTE-EEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKI 568 (820)
Q Consensus 506 ~--~~~y~~-~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i 568 (820)
T Consensus 364 ~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~--~~ls~~a~~~-L~~y~WPGNVREL~n~iera 426 (513)
T PRK10820 364 TLNLPPLRDCPQDIMPLTELFVARFADEQGVPR--PKLSADLSTV-LTRYGWPGNVRQLKNAIYRA 426 (513)
T ss_pred CCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHH-HHHCCCCCHHHHHHHHHHHH
T ss_conf 255888344655699999999999999759998--9847999999-97089997999999999999