HHsearch alignment for GI: 254780270 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=94.79 E-value=0.36 Score=27.67 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCC-CCEEEEEECH
Q ss_conf 673599860565650279999997708-82499861888888883563200145671289999983278-8739999331
Q gi|254780270|r 365 KGLILCFVGPPGVGKTSLAQSIAKATG-RQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKR-SNPLLLLDEI 442 (820)
Q Consensus 365 ~g~il~l~gppgvGKts~~~sia~al~-r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~-~npv~~ldei 442 (820)
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaa-D---------t~R---paA~eQL~~la~~~~v~~~----- 160 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA-D---------VYR---PAAIKQLETLAEQVGVDFF----- 160 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-C---------CCH---HHHHHHHHHHHHHCCCCEE-----
T ss_conf 996999974688851858999999999738983798558-8---------770---5899999999985198043-----
Q ss_pred HHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHCCCE
Q ss_conf 554231177115566554060016813320103523644279999348655441311724
Q gi|254780270|r 443 DKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLNIPLPLMDRM 502 (820)
Q Consensus 443 dk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~i~~~l~drm 502 (820)
T Consensus 161 ---~~~~~~dp~~ia~~a~~~ak~~~------------~DvvivDTAGRl~~d~~Lm~El 205 (453)
T PRK10867 161 ---PSDVGQKPVDIVNAALKEAKLKF------------YDVLLVDTAGRLHVDEAMMDEI 205 (453)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHCC------------CCEEEEECCCCHHCCHHHHHHH
T ss_conf ---67889988999999999999779------------9999997876012108889999