HHsearch alignment for GI: 254780270 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.82 E-value=2.9e-17 Score=149.60 Aligned_cols=301 Identities=20% Similarity=0.291 Sum_probs=223.9
Q ss_pred HHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 67899985-222478857888889999999875311----025789999987654041587663221-068899877665
Q gi|254780270|r 267 EISDFEAR-ISKIRLSKEAREKALSELQKLRQMNPL----SAESSVVRNYLDWLLGVPWDKKSKTKK-NLDFAIRILDQD 340 (820)
Q Consensus 267 Ei~el~~K-i~~~~lp~e~~~~~~kEl~rL~~m~~~----s~E~~v~r~Yld~~~~lPW~~~t~~~~-dl~~a~~iLd~~ 340 (820)
T Consensus 380 ~av~Ls~rYi~dr~lPDKAIdllDea~a~~~l~~~~~~~~~v~~~di~~vv~~~t~ip~~~~~~~~~~~l~~le~~l~~~ 459 (758)
T PRK11034 380 AAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999976502688961999999999888751345663165899999999987503607677677999999899998778
Q ss_pred HHCHHHHHHHHHHHHHHHH--HC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC---HHHHCCCCCC
Q ss_conf 2011689999999999998--42-4446735998605656502799999977088249986188888---8883563200
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQM--RV-IKNKGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYD---EADIRGHRRT 414 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~--~~-~~~~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d---~~~i~gh~~t 414 (820)
T Consensus 460 viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaPPG 539 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCC
T ss_conf 74549999999999999863888999970589997899877799999999998667721426653120147774489986
Q ss_pred CCCC-CCHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCC-
Q ss_conf 1456-71289999983278873999933155423117711556655406001681332010352364427999934865-
Q gi|254780270|r 415 YIGS-MPGRIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTL- 492 (820)
Q Consensus 415 y~ga-~pg~ii~~l~~~~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~- 492 (820)
T Consensus 540 YVGy~eGG~Lte~Vr~--~PysVvL~DEIEKAhp----dV~nilLQvlD---~G~LtD~~-Gr~vdF~NtiIImTSN~Ga 609 (758)
T PRK11034 540 YVGFDQGGLLTDAVIK--HPHAVLLLDEIEKAHP----DVFNLLLQVMD---NGTLTDNN-GRKADFRNVVLVMTTNAGV 609 (758)
T ss_pred CCCCCCCCCCCHHHHH--CCCEEEEEHHHHHHCH----HHHHHHHHHCC---CCCCCCCC-CCEEECEEEEEEEECCCCH
T ss_conf 6676777701287873--9877997336756398----99998873237---78301799-9988440019998256174
Q ss_pred -CC------------------------CHHHCCCE-EEEEECCCCHHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCHHH
Q ss_conf -54------------------------41311724-79982587868999899986089--8998625781313228999
Q gi|254780270|r 493 -NI------------------------PLPLMDRM-EIIRIAGYTEEEKLQIAKNHLVK--KVLTEHALKQEECCISDGV 544 (820)
Q Consensus 493 -~i------------------------~~~l~drm-e~i~~~~y~~~ek~~i~~~~l~p--~~~~~~~~~~~~~~~~~~~ 544 (820)
T Consensus 610 ~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i---~l~~~~~a 686 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV---SLEVSQEA 686 (758)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEECHHH
T ss_conf 878642147554203599999999547986772367478638899999999999999999999997898---59988999
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHHH-HHHHHHHHCCC
Q ss_conf 999973-1774102347888799998-98765421178
Q gi|254780270|r 545 LLDIIR-LFTHEAGVRSFERALMKIA-RKAVTKIVKNS 580 (820)
Q Consensus 545 i~~ii~-~Yt~EaGvR~l~r~i~~i~-r~~~~~~~~~~ 580 (820)
T Consensus 687 ~~~l~~~gyd~~~GARpl~R~I~~~i~~~La~~il~g~ 724 (758)
T PRK11034 687 RDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGS 724 (758)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999848894537112889999998899999997298