HHsearch alignment for GI: 254780270 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.56 E-value=1.9e-06 Score=67.62 Aligned_cols=178 Identities=26% Similarity=0.370 Sum_probs=112.5
Q ss_pred HHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
Q ss_conf 20116899999999999984244467359986056565027999999770----------88249986188888888356
Q gi|254780270|r 341 HFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKAT----------GRQYVRMSLGGVYDEADIRG 410 (820)
Q Consensus 341 hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al----------~r~f~~islgg~~d~~~i~g 410 (820)
T Consensus 188 viGR~~Ei~r~i~iL~Rr~KN-N-----piLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~L-----iAG 256 (758)
T PRK11034 188 LIGREKELERAIQVLCRRRKN-N-----PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-----LAG 256 (758)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-C-----CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHH-----HCC
T ss_conf 738489999999999763258-9-----60216999869999999999997389976558988998458778-----616
Q ss_pred CCCCCCCCCCHHHHHHHHHC-CCCCEEEEEECHHHH-H--HHCCC--CHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEE
Q ss_conf 32001456712899999832-788739999331554-2--31177--115566554060016813320103523644279
Q gi|254780270|r 411 HRRTYIGSMPGRIIQSLKRA-KRSNPLLLLDEIDKM-G--SDLRG--DPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVM 484 (820)
Q Consensus 411 h~~ty~ga~pg~ii~~l~~~-~~~npv~~ldeidk~-~--~~~~g--dp~~allevldp~qn~~f~d~y~~~~~dls~v~ 484 (820)
T Consensus 257 t--kyRGefEeRlk~vi~e~~~~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~Lar---G~l------------~~I 319 (758)
T PRK11034 257 T--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS---GKI------------RVI 319 (758)
T ss_pred C--CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHC---CCC------------EEE
T ss_conf 8--64154999999999999857985999804344226887677764678874578746---972------------399
Q ss_pred EEEECCCC----CCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 99934865----544131172479982587868999899986089899862578131322899999997317
Q gi|254780270|r 485 FIMTANTL----NIPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLF 552 (820)
Q Consensus 485 fi~tan~~----~i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Y 552 (820)
T Consensus 320 gaTT~~EYrk~iekD~AL~RRFq~V~V~EPs~e~t~~IL~g-l~~~yE~~H-----~v~~~d~al~~av~Ls 385 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIING-LKPKYEAHH-----DVRYTAKAVRAAVELA 385 (758)
T ss_pred EECCHHHHHHCCCCCHHHHHCCCEEECCCCCHHHHHHHHHH-HHHHHHHCC-----CCEECCHHHHHHHHHH
T ss_conf 94377998750321478884282653189998999999998-999873236-----9577438999999999