HHsearch alignment for GI: 254780270 and conserved domain: PRK11388
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional.
Probab=98.93 E-value=6.2e-08 Score=78.89 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=133.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCCCC---HHHHCCCCCCC-CCCCCHHHHHHHHHCCCCCE
Q ss_conf 446735998605656502799999977088---249986188888---88835632001-45671289999983278873
Q gi|254780270|r 363 KNKGLILCFVGPPGVGKTSLAQSIAKATGR---QYVRMSLGGVYD---EADIRGHRRTY-IGSMPGRIIQSLKRAKRSNP 435 (820)
Q Consensus 363 ~~~g~il~l~gppgvGKts~~~sia~al~r---~f~~islgg~~d---~~~i~gh~~ty-~ga~pg~ii~~l~~~~~~np 435 (820)
T Consensus 346 ~~~~pVL-I~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~~~e~elfG~~~~~~~~g~~g~~e~A------~gG 418 (639)
T PRK11388 346 KSSFPIL-LCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDEALAEEFLGSDRTDSENGRLSKFELA------HGG 418 (639)
T ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHCC------CCC
T ss_conf 8899689-889898109999999995577789981898789898467899873877676434668624403------698
Q ss_pred EEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEE--CCCCCCCCCEEEEEECCC-C-C-C-----CHHHCCCEEE-
Q ss_conf 99993315542311771155665540600168133201--035236442799993486-5-5-4-----4131172479-
Q gi|254780270|r 436 LLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHY--LEVEYDLSDVMFIMTANT-L-N-I-----PLPLMDRMEI- 504 (820)
Q Consensus 436 v~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y--~~~~~dls~v~fi~tan~-~-~-i-----~~~l~drme~- 504 (820)
T Consensus 419 TL~LdeI~~lp~~~Q----~~LlrvL~---~~~~~r~g~~~~~~v---dvRiiaat~~~l~~~v~~g~fr~dLyyrl~~~ 488 (639)
T PRK11388 419 TLFLEKVEYLSVELQ----SALLQVLK---TGVITRLDSRRLIPV---DVRVIATTTADLAMLVEQNRFSRQLYYALHAF 488 (639)
T ss_pred EEEECCHHHCCHHHH----HHHHHHHH---CCCEEECCCCCEEEE---EEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 288467264999999----99999986---593785699946664---27999736450899987498549999876744
Q ss_pred -EEECCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -982587868-999899986089899862578131322899999997317741023478887999989876542117852
Q gi|254780270|r 505 -IRIAGYTEE-EKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKNSDT 582 (820)
Q Consensus 505 -i~~~~y~~~-ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~~~~ 582 (820)
T Consensus 489 ~i~lPpLReR~~Di~~L~~~~l~~~~~~~~~---~~~ls~~a~~~-L~~y~WPGNvrEL~nvl~~a~~~-----~----~ 555 (639)
T PRK11388 489 EITIPPLRMRREDIPALVNNKLRSLEKRFST---RLKIDDDALAR-LVSYRWPGNDFELRSVIENLALS-----S----D 555 (639)
T ss_pred HCCCCCHHHCHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHHHH-----C----C
T ss_conf 1057332325343999999999999997199---99989999999-97289997999999999999983-----8----9
Q ss_pred EECCCHHHHHHHH
Q ss_conf 0127967867530
Q gi|254780270|r 583 TVSINENNLQDYL 595 (820)
Q Consensus 583 ~~~i~~~~l~~~l 595 (820)
T Consensus 556 ~~~I~~~~Lp~~~ 568 (639)
T PRK11388 556 NGRIRLSDLPEHL 568 (639)
T ss_pred CCCCCHHHCCHHH
T ss_conf 9842679780877