HHsearch alignment for GI: 254780270 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.70 E-value=6.6e-07 Score=71.10 Aligned_cols=167 Identities=19% Similarity=0.244 Sum_probs=113.3
Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----C-------------EEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 8424446735998605656502799999977088-----2-------------499861888888883563200145671
Q gi|254780270|r 359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-----Q-------------YVRMSLGGVYDEADIRGHRRTYIGSMP 420 (820)
Q Consensus 359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-----~-------------f~~islgg~~d~~~i~gh~~ty~ga~p 420 (820)
T Consensus 31 a~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas~~~v~~~- 109 (721)
T PRK12323 31 ALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM- 109 (721)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHH-
T ss_conf 9971997544750279988898999999999768998667898788787765468775689876477436767888999-
Q ss_pred HHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-
Q ss_conf 2899999832------788739999331554231177115566554060016813320103523644279999348655-
Q gi|254780270|r 421 GRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN- 493 (820)
Q Consensus 421 g~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~- 493 (820)
T Consensus 110 ----r~l~~~~~y~P~~~~~KvyiiDevhmls~~a----fnalLKtlE-------------ePP--~hv~FilaTT~~~K 166 (721)
T PRK12323 110 ----AQLLDQAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLE-------------EPP--PHVKFILATTDPQK 166 (721)
T ss_pred ----HHHHHHCCCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHH
T ss_conf ----9999854558876644699985400058999----999998401-------------797--55389994386344
Q ss_pred CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r 494 IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF 561 (820)
Q Consensus 494 i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l 561 (820)
T Consensus 167 ip~TilSRc~~f~~~~~~~~~i~~---------~l~~i-~~~E~i~~~~~al~~ia~~--a~Gs~RDa 222 (721)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVS---------HLDAI-LGQEGIGHEGNALRLLAQA--AHGSMRDA 222 (721)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHH
T ss_conf 858898776542347899999999---------99999-9983997799999999997--58964768