HHsearch alignment for GI: 254780270 and conserved domain: PRK12323

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.70  E-value=6.6e-07  Score=71.10  Aligned_cols=167  Identities=19%  Similarity=0.244  Sum_probs=113.3

Q ss_pred             HHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC-----C-------------EEEEECCCCCCHHHHCCCCCCCCCCCC
Q ss_conf             8424446735998605656502799999977088-----2-------------499861888888883563200145671
Q gi|254780270|r  359 MRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGR-----Q-------------YVRMSLGGVYDEADIRGHRRTYIGSMP  420 (820)
Q Consensus       359 ~~~~~~~g~il~l~gppgvGKts~~~sia~al~r-----~-------------f~~islgg~~d~~~i~gh~~ty~ga~p  420 (820)
T Consensus        31 a~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas~~~v~~~-  109 (721)
T PRK12323         31 ALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM-  109 (721)
T ss_pred             HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHH-
T ss_conf             9971997544750279988898999999999768998667898788787765468775689876477436767888999-


Q ss_pred             HHHHHHHHHC------CCCCEEEEEECHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-
Q ss_conf             2899999832------788739999331554231177115566554060016813320103523644279999348655-
Q gi|254780270|r  421 GRIIQSLKRA------KRSNPLLLLDEIDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-  493 (820)
Q Consensus       421 g~ii~~l~~~------~~~npv~~ldeidk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-  493 (820)
T Consensus       110 ----r~l~~~~~y~P~~~~~KvyiiDevhmls~~a----fnalLKtlE-------------ePP--~hv~FilaTT~~~K  166 (721)
T PRK12323        110 ----AQLLDQAVYAPTAGRFKVYMIDEVHMLTNHA----FNAMLKTLE-------------EPP--PHVKFILATTDPQK  166 (721)
T ss_pred             ----HHHHHHCCCCCCCCCEEEEEEECCCCCCHHH----HHHHHHHHC-------------CCC--CCEEEEEECCCHHH
T ss_conf             ----9999854558876644699985400058999----999998401-------------797--55389994386344


Q ss_pred             CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf             44131172479982587868999899986089899862578131322899999997317741023478
Q gi|254780270|r  494 IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSF  561 (820)
Q Consensus       494 i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l  561 (820)
T Consensus       167 ip~TilSRc~~f~~~~~~~~~i~~---------~l~~i-~~~E~i~~~~~al~~ia~~--a~Gs~RDa  222 (721)
T PRK12323        167 IPVTVLSRCLQFNLKQMPPGHIVS---------HLDAI-LGQEGIGHEGNALRLLAQA--AHGSMRDA  222 (721)
T ss_pred             CCHHHHHHHHHCCCCCCCHHHHHH---------HHHHH-HHHCCCCCCHHHHHHHHHH--CCCCHHHH
T ss_conf             858898776542347899999999---------99999-9983997799999999997--58964768