HHsearch alignment for GI: 254780270 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.45 E-value=1.5e-12 Score=113.80 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=118.5
Q ss_pred HCCCCC-CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 404158-7663221068899877665201168999999999999842444673599860565650279999997708824
Q gi|254780270|r 316 LGVPWD-KKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAKATGRQY 394 (820)
Q Consensus 316 ~~lPW~-~~t~~~~dl~~a~~iLd~~hyGl~~vK~rile~lav~~~~~~~~g~il~l~gppgvGKts~~~sia~al~r~f 394 (820)
T Consensus 1 ~~~lWveKYRP~~~~----------dvvGq~~i~~~L~~~~------~~~~~phlLf~GPpG~GKTt~A~~lA~~l~~~~ 64 (337)
T PRK12402 1 MAMLWTEKYRPSLFE----------DILGQESVVDHLSALA------ASGNLPHLVVYGPSGSGKTAAVRALARELYGDP 64 (337)
T ss_pred CCCCCCCCCCCCCHH----------HHCCCHHHHHHHHHHH------HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 988532141889799----------8039799999999999------779987698889298489999999999967997
Q ss_pred EE-----EECCCCCC--HHHHCCCCCCC-CCCCCHH-------HHH-HHHHCCCCC------EEEEEECHHHHHHHCCCC
Q ss_conf 99-----86188888--88835632001-4567128-------999-998327887------399993315542311771
Q gi|254780270|r 395 VR-----MSLGGVYD--EADIRGHRRTY-IGSMPGR-------IIQ-SLKRAKRSN------PLLLLDEIDKMGSDLRGD 452 (820)
Q Consensus 395 ~~-----islgg~~d--~~~i~gh~~ty-~ga~pg~-------ii~-~l~~~~~~n------pv~~ldeidk~~~~~~gd 452 (820)
T Consensus 65 ~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~A--- 141 (337)
T PRK12402 65 WENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDA--- 141 (337)
T ss_pred CCCCCCEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHH---
T ss_conf 56783331165311356400101664234420153327737899999999986148877880499970713179999---
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCC-CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15566554060016813320103523644279999348655-44131172479982587868999899986089899862
Q gi|254780270|r 453 PSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTANTLN-IPLPLMDRMEIIRIAGYTEEEKLQIAKNHLVKKVLTEH 531 (820)
Q Consensus 453 p~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan~~~-i~~~l~drme~i~~~~y~~~ek~~i~~~~l~p~~~~~~ 531 (820)
T Consensus 142 -q~aLlk~lEe~---------------~~~~~fIl~t~~~~~ii~tI~SRC~~i~F~~~s~~~i~~~L~-----~I~~~- 199 (337)
T PRK12402 142 -QQALRRIMERY---------------SETCRFIFSTTQPSKLIPPIRSRCLPLFFRPVPDDEIRSVLE-----SIAAA- 199 (337)
T ss_pred -HHHHHHHHHCC---------------CCCEEEEEECCCCCCCCHHHHHHCEEEECCCCCHHHHHHHHH-----HHHHH-
T ss_conf -99999887408---------------876699872386444752477624454358989999999999-----99998-
Q ss_pred CCCCCCCCCCHHHHHHHHHC
Q ss_conf 57813132289999999731
Q gi|254780270|r 532 ALKQEECCISDGVLLDIIRL 551 (820)
Q Consensus 532 ~~~~~~~~~~~~~i~~ii~~ 551 (820)
T Consensus 200 ----E~i~~~~~~l~~ia~~ 215 (337)
T PRK12402 200 ----EGVEISDDGLDLIAYY 215 (337)
T ss_pred ----CCCCCCHHHHHHHHHH
T ss_conf ----4999899999999998