HHsearch alignment for GI: 254780270 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=98.21 E-value=8.2e-06 Score=62.83 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH
Q ss_conf 59986056565027999999770882499861888888883563200145671289999983278873999933155423
Q gi|254780270|r 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRGHRRTYIGSMPGRIIQSLKRAKRSNPLLLLDEIDKMGS 447 (820)
Q Consensus 368 il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~~~~npv~~ldeidk~~~ 447 (820)
T Consensus 143 PLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Y--vtae~F~~----~~v~ai~~~~~~~Fr~~yr~~DvLLIDDIQfl~g 216 (455)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVSALRESGGKILY--VSSELFTE----HLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSG 216 (455)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE--ECHHHHHH----HHHHHHHCCCHHHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 75887899997899999999985379986999--74999999----9999997588999999996388776314788728
Q ss_pred HCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC---CCC-CCHHHCCCEE---EEEECCCCHHHHHHHHH
Q ss_conf 1177115566554060016813320103523644279999348---655-4413117247---99825878689998999
Q gi|254780270|r 448 DLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN---TLN-IPLPLMDRME---IIRIAGYTEEEKLQIAK 520 (820)
Q Consensus 448 ~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi~tan---~~~-i~~~l~drme---~i~~~~y~~~ek~~i~~ 520 (820)
T Consensus 217 K~--~tqeEff~tfN-------------~L~~~~KQIVitsDr~P~el~~l~~RL~SRf~~GL~v~I~~Pd~etr~~Il~ 281 (455)
T PRK12422 217 KG--ATQEEFFHTFN-------------SLHTEGKLIVISSSYAPGDLKAMEERLISRFEWGIAIPIHPLTREGLRSFLM 281 (455)
T ss_pred CH--HHHHHHHHHHH-------------HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHH
T ss_conf 48--89999999999-------------9998599699968989576512689999886376132168999899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 86089899862578131322899999997317741023478887999989876542117
Q gi|254780270|r 521 NHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKIVKN 579 (820)
Q Consensus 521 ~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~~~~ 579 (820)
T Consensus 282 ~-----k~~~~-----~~~l~~ev~~~iA~~i~~--niReLeGal~~l~~~~~~~~~~~ 328 (455)
T PRK12422 282 R-----QAEQL-----SIRIEETALDFLIQALSS--NVKTLLHALTLLAKRVAYKKLSH 328 (455)
T ss_pred H-----HHHHC-----CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9-----99871-----888844689999999755--17999999999999999871568