HHsearch alignment for GI: 254780270 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.60 E-value=1.3e-13 Score=121.89 Aligned_cols=190 Identities=24% Similarity=0.368 Sum_probs=130.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE--CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEEEC
Q ss_conf 35998605656502799999977088249986--18888888835632001456712899999832---78873999933
Q gi|254780270|r 367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMS--LGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA---KRSNPLLLLDE 441 (820)
Q Consensus 367 ~il~l~gppgvGKts~~~sia~al~r~f~~is--lgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~---~~~npv~~lde 441 (820)
T Consensus 53 ~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkd---lr~------------ii~~A~~~~~~~g~~tILFIDE 117 (726)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKD---LRA------------EVDAAKERLERHGKRTILFIDE 117 (726)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHH---HHH------------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8278889799999999999988748867998562037799---999------------9999999987459965999862
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 155423117711556655406001681332010352364427999--934865-54413117247998258786899989
Q gi|254780270|r 442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQI 518 (820)
Q Consensus 442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i 518 (820)
T Consensus 118 IHRfNK~QQ----D~LLp~vE~-----------------G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~i 176 (726)
T PRK13341 118 VHRFNKAQQ----DALLPWVEN-----------------GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQL 176 (726)
T ss_pred HHHCCHHHH----HHHHHHHCC-----------------CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHH
T ss_conf 542588789----987888606-----------------83899970478974364298883234667438999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEECCCHHHHHHHHCC
Q ss_conf 9986089899862578131322899999997317741023478887999989876542-117852012796786753052
Q gi|254780270|r 519 AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKI-VKNSDTTVSINENNLQDYLGV 597 (820)
Q Consensus 519 ~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~-~~~~~~~~~i~~~~l~~~lg~ 597 (820)
T Consensus 177 l~rAl~---d~~~g~~~~~i~i~~~al~~l~~~s~GD--aR~aLN~LE-----lav~~~~~~~~~~~~i~~~~~~~~~~~ 246 (726)
T PRK13341 177 LKRALQ---DKERGYGDRNIDLEPEAEKHLVDVANGD--ARSLLNALE-----LAVESTPPDEDGVIHINLAIAEESIQQ 246 (726)
T ss_pred HHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHHH-----HHHHHCCCCCCCCEEECHHHHHHHHHH
T ss_conf 999987---6743256678775989999999975973--999999999-----999707457688344359999999856
Q ss_pred CCCCC
Q ss_conf 00033
Q gi|254780270|r 598 PRYKY 602 (820)
Q Consensus 598 ~~~~~ 602 (820)
T Consensus 247 ~~~~Y 251 (726)
T PRK13341 247 RAVLY 251 (726)
T ss_pred HHHCC
T ss_conf 66056