HHsearch alignment for GI: 254780270 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.60  E-value=1.3e-13  Score=121.89  Aligned_cols=190  Identities=24%  Similarity=0.368  Sum_probs=130.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE--CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHC---CCCCEEEEEEC
Q ss_conf             35998605656502799999977088249986--18888888835632001456712899999832---78873999933
Q gi|254780270|r  367 LILCFVGPPGVGKTSLAQSIAKATGRQYVRMS--LGGVYDEADIRGHRRTYIGSMPGRIIQSLKRA---KRSNPLLLLDE  441 (820)
Q Consensus       367 ~il~l~gppgvGKts~~~sia~al~r~f~~is--lgg~~d~~~i~gh~~ty~ga~pg~ii~~l~~~---~~~npv~~lde  441 (820)
T Consensus        53 ~S~Il~GPPGtGKTTLA~iIA~~t~~~F~~lsAv~sgvkd---lr~------------ii~~A~~~~~~~g~~tILFIDE  117 (726)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKD---LRA------------EVDAAKERLERHGKRTILFIDE  117 (726)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHH---HHH------------HHHHHHHHHHHCCCCEEEEEEC
T ss_conf             8278889799999999999988748867998562037799---999------------9999999987459965999862


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE--EECCCC-CCCHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf             155423117711556655406001681332010352364427999--934865-54413117247998258786899989
Q gi|254780270|r  442 IDKMGSDLRGDPSAALLEVLDPAQNSSFVDHYLEVEYDLSDVMFI--MTANTL-NIPLPLMDRMEIIRIAGYTEEEKLQI  518 (820)
Q Consensus       442 idk~~~~~~gdp~~allevldp~qn~~f~d~y~~~~~dls~v~fi--~tan~~-~i~~~l~drme~i~~~~y~~~ek~~i  518 (820)
T Consensus       118 IHRfNK~QQ----D~LLp~vE~-----------------G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~i  176 (726)
T PRK13341        118 VHRFNKAQQ----DALLPWVEN-----------------GTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQL  176 (726)
T ss_pred             HHHCCHHHH----HHHHHHHCC-----------------CEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHH
T ss_conf             542588789----987888606-----------------83899970478974364298883234667438999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCEECCCHHHHHHHHCC
Q ss_conf             9986089899862578131322899999997317741023478887999989876542-117852012796786753052
Q gi|254780270|r  519 AKNHLVKKVLTEHALKQEECCISDGVLLDIIRLFTHEAGVRSFERALMKIARKAVTKI-VKNSDTTVSINENNLQDYLGV  597 (820)
Q Consensus       519 ~~~~l~p~~~~~~~~~~~~~~~~~~~i~~ii~~Yt~EaGvR~l~r~i~~i~r~~~~~~-~~~~~~~~~i~~~~l~~~lg~  597 (820)
T Consensus       177 l~rAl~---d~~~g~~~~~i~i~~~al~~l~~~s~GD--aR~aLN~LE-----lav~~~~~~~~~~~~i~~~~~~~~~~~  246 (726)
T PRK13341        177 LKRALQ---DKERGYGDRNIDLEPEAEKHLVDVANGD--ARSLLNALE-----LAVESTPPDEDGVIHINLAIAEESIQQ  246 (726)
T ss_pred             HHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHHH-----HHHHHCCCCCCCCEEECHHHHHHHHHH
T ss_conf             999987---6743256678775989999999975973--999999999-----999707457688344359999999856


Q ss_pred             CCCCC
Q ss_conf             00033
Q gi|254780270|r  598 PRYKY  602 (820)
Q Consensus       598 ~~~~~  602 (820)
T Consensus       247 ~~~~Y  251 (726)
T PRK13341        247 RAVLY  251 (726)
T ss_pred             HHHCC
T ss_conf             66056