HHsearch alignment for GI: 254780270 and conserved domain: TIGR00390
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=97.53 E-value=0.0002 Score=52.27 Aligned_cols=163 Identities=23% Similarity=0.391 Sum_probs=112.2
Q ss_pred HHHHCCCCCEEEEEECHHHHHHHC----CCCHHH-----HHHHHCCCCCCCCEEEEECCCCCCCCCEEEEEECC-----C
Q ss_conf 998327887399993315542311----771155-----66554060016813320103523644279999348-----6
Q gi|254780270|r 426 SLKRAKRSNPLLLLDEIDKMGSDL----RGDPSA-----ALLEVLDPAQNSSFVDHYLEVEYDLSDVMFIMTAN-----T 491 (820)
Q Consensus 426 ~l~~~~~~npv~~ldeidk~~~~~----~gdp~~-----allevldp~qn~~f~d~y~~~~~dls~v~fi~tan-----~ 491 (820)
T Consensus 262 A~~~vE-~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEG---S~V~TKyG~Vk--TdHiLFIAaGAF~lAKP 335 (463)
T TIGR00390 262 AIDRVE-QSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEG---STVNTKYGSVK--TDHILFIAAGAFHLAKP 335 (463)
T ss_pred HHHHHH-HCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEECCEEE--CCHHHHHHHHHHCCCCC
T ss_conf 999998-4782898530354216888678887655651011420226---66431001042--21578767523202777
Q ss_pred CC-CCHHHCCCEEE-EEECCCCHHHHHHHHHH---HHHHH---HHHHHCCCCCCCCCCHHHHHHHHHC-C-----CCCCH
Q ss_conf 55-44131172479-98258786899989998---60898---9986257813132289999999731-7-----74102
Q gi|254780270|r 492 LN-IPLPLMDRMEI-IRIAGYTEEEKLQIAKN---HLVKK---VLTEHALKQEECCISDGVLLDIIRL-F-----THEAG 557 (820)
Q Consensus 492 ~~-i~~~l~drme~-i~~~~y~~~ek~~i~~~---~l~p~---~~~~~~~~~~~~~~~~~~i~~ii~~-Y-----t~EaG 557 (820)
T Consensus 336 SDLIPE-LQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv---~i~F~d~AI~~iAe~ay~~N~~teniG 411 (463)
T TIGR00390 336 SDLIPE-LQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGV---NIEFSDEAIKKIAELAYNVNQKTENIG 411 (463)
T ss_pred CCCCCH-HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 666631-1066737787676329999996208343689999998876276---403355689999999998164423346
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCC
Q ss_conf 34788879999898765421178520127967867530520
Q gi|254780270|r 558 VRSFERALMKIARKAVTKIVKNSDTTVSINENNLQDYLGVP 598 (820)
Q Consensus 558 vR~l~r~i~~i~r~~~~~~~~~~~~~~~i~~~~l~~~lg~~ 598 (820)
T Consensus 412 ARRLHTv~E~lledisFea~D~~~~~~~I~~~YV~~kL~~~ 452 (463)
T TIGR00390 412 ARRLHTVLERLLEDISFEAPDVSGQKVTITADYVEKKLGDL 452 (463)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHH
T ss_conf 50466899999987512666863432450789999998788