HHsearch alignment for GI: 254780270 and conserved domain: TIGR01242

>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=98.98  E-value=8.3e-09  Score=85.50  Aligned_cols=175  Identities=27%  Similarity=0.410  Sum_probs=119.0

Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC-------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHH
Q ss_conf             9877665201168999999999999842444-------673599860565650279999997708824998618888888
Q gi|254780270|r  334 IRILDQDHFGLEKVKERIIEYLAVQMRVIKN-------KGLILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLGGVYDEA  406 (820)
Q Consensus       334 ~~iLd~~hyGl~~vK~rile~lav~~~~~~~-------~g~il~l~gppgvGKts~~~sia~al~r~f~~islgg~~d~~  406 (820)
T Consensus       117 P~V~y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vGI~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvV------gS  190 (364)
T TIGR01242       117 PNVSYEDIGGLEKQIREIREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------GS  190 (364)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE------HH
T ss_conf             823340267878999999888734688831677628898986570075797688999986314551268860------44


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHCCCCCE-EEEEECHHHHHH-----HCCCCH--HHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf             83563200145671289999983278873-999933155423-----117711--5566554060016813320103523
Q gi|254780270|r  407 DIRGHRRTYIGSMPGRIIQSLKRAKRSNP-LLLLDEIDKMGS-----DLRGDP--SAALLEVLDPAQNSSFVDHYLEVEY  478 (820)
Q Consensus       407 ~i~gh~~ty~ga~pg~ii~~l~~~~~~np-v~~ldeidk~~~-----~~~gdp--~~allevldp~qn~~f~d~y~~~~~  478 (820)
T Consensus       191 ElV---~KyIGEGArLV~~~F~LAkEKaPsIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAE--lDGFd--------  257 (364)
T TIGR01242       191 ELV---RKYIGEGARLVREVFELAKEKAPSIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAE--LDGFD--------  257 (364)
T ss_pred             HHH---HHHHCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HCCCC--------
T ss_conf             444---44413316899999998530698168610133354321146778731578899999975--24888--------


Q ss_pred             CCCCEEEEEECCCCC-CCHHH-----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             644279999348655-44131-----1724799825878689998999860898998
Q gi|254780270|r  479 DLSDVMFIMTANTLN-IPLPL-----MDRMEIIRIAGYTEEEKLQIAKNHLVKKVLT  529 (820)
Q Consensus       479 dls~v~fi~tan~~~-i~~~l-----~drme~i~~~~y~~~ek~~i~~~~l~p~~~~  529 (820)
T Consensus       258 ~rg~VkviaATNR~DilDPA~LRPGRFDR~--IEVPlP~~~GR~eIlkiHTr~~~la  312 (364)
T TIGR01242       258 PRGNVKVIAATNRPDILDPAILRPGRFDRI--IEVPLPDFEGRLEILKIHTRKMKLA  312 (364)
T ss_pred             CCCCEEEEEECCCCHHCCCCCCCCCCCCCE--EECCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             767616887207620204321488861325--7316978322056655521000012